| Literature DB >> 19622149 |
Aline Dépraz1, Jacques Hausser, Markus Pfenninger.
Abstract
BACKGROUND: Mitochondrial DNA sequencing increasingly results in the recognition of genetically divergent, but morphologically cryptic lineages. Species delimitation approaches that rely on multiple lines of evidence in areas of co-occurrence are particularly powerful to infer their specific status. We investigated the species boundaries of two cryptic lineages of the land snail genus Trochulus in a contact zone, using mitochondrial and nuclear DNA marker as well as shell morphometrics.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19622149 PMCID: PMC2724411 DOI: 10.1186/1471-2148-9-171
Source DB: PubMed Journal: BMC Evol Biol ISSN: 1471-2148 Impact factor: 3.260
Figure 1Bayesian haplotype tree of . Branches with a posterior probability lower than 50% are dashed. Perforatella incarnata and Trochulus lubomirskii were included as outgroups. The 44 haplotypes clustered into seven lineages (L1 to L7). Most of them had previously been identified (lineages A-I as in [9]).
Mitochondrial (mtDNA) and Nuclear (ncDNA) data.
| 7.035617 | 46.504849 | 18 | 0/100 | 0.0004 | ± 0.0008 | 12.2 | ± 2.3 | ||
| 7.094758 | 46.614377 | 19 | 4.8/95.3 | 0.0004 | ± 0.0008 | 13.3 | ± 2.9 | ||
| 7.152821 | 46.629641 | 6 | 77.8/0 | 0.0704 | ± 0.0392 | 8.0 | ± 1.5 | ||
| 7.106006 | 46.663751 | 6 | 25/50 | 0.0727 | ± 0.0412 | 10.7 | ± 3.1 | ||
| 7.091985 | 46.572629 | 14 | 11.2/66.9 | 0.0831 | ± 0.0430 | 15.2 | ± 1.5 | ||
| 7.118248 | 46.606853 | 19 | 84.4/15.8 | 0.0286 | ± 0.0156 | 14.3 | ± 2.5 | ||
| 7.061215 | 46.538779 | 15 | 0/100 | 0.0086 | ± 0.0056 | 13.0 | ± 2.2 | ||
| 7.121574 | 46.689451 | 9 | 53.3/6.7 | 0.0872 | ± 0.0456 | 13.0 | ± 2.5 | ||
| 7.121526 | 46.675301 | 9 | 84.6/0 | 0.0499 | ± 0.0270 | 11.3 | ± 4.3 | ||
| 7.144454 | 46.765489 | 14 | 82.4/0 | 0.0532 | ± 0.0281 | 14.8 | ± 3.4 | ||
| 7.110557 | 46.714706 | 14 | 73.4/26.7 | 0.0357 | ± 0.0195 | 13.8 | ± 2.4 | ||
| 7.065384 | 46.463697 | 18 | 0/90 | 0.0253 | ± 0.0140 | 14.7 | ± 2.4 | ||
| 7.156845 | 46.596845 | 17 | 19/66.8 | 0.0655 | ± 0.0339 | 12.5 | ± 2.4 | ||
| 7.106200 | 46.638816 | 14 | 73.4/26.7 | 0.0371 | ± 0.0202 | 11.5 | ± 2.1 | ||
For each locality, the East and North geographical coordinates (WGS84), the haplotypes sampled, the percentage of L1 and L2 lineages (% L1/L2) and the nucleotide diversity (N. div.) with the standard deviation (SD) are given. For each sampled locality, the number of genotyped individuals (N), the average number of observed alleles over the 6 loci (Nalleles ± st. dev.; SD) are given.
Figure 2Spatial distribution of nuclear clusters and haplotype lineages. The spatial distribution of the sampling sites in the Sarine valley (Switzerland) is given together with the cyto-nuclear composition of the individuals sampled. Each horizontal bar represents a single individual, the first column shows the haplotype lineage (white = lineage 1, black = lineage 2) and the second column shows the estimated nuclear composition of the multilocus microsatellite genotype (dark grey = cluster α, light grey = cluster β).
Figure 3Mismatch distributions of haplotype lineages. The lineage 1 shows a signal of population expansion, which is not the case of lineage 2. The observed distribution is in full stroke, the simulated distribution in a dashed line. For each lineage, expansion statistics are given.
Cyto-nuclear association
| 80 | 0 | 1 | |
| 22 | 7 | 82 |
Results of the assignments based on the nuclear genotypes into two clusters (α and β). Lineage 1 and 2 refer to the mitochondrial group. The rxc exact contingency table test on independence was highly significant (p < 0.001).
Figure 4Discriminant analyses of shell morphometric data. A: Schematic representation of the 14 measurements taken on the shell from above, below and the front. Details on the measures are given in the text. Dotted lines represent orientation axes. B: Frequency plot of canonical scores on canonical root of discriminant analyses on morphometric variables grouped according to nuclear cluster membership (>90%). N = 171. Variables retained in the model: HFW (standardised coefficient = 0.79), HSP (0.71), DOM (0.69) and AES (0.67). Grouping resulted in 77.2% correct classifications. C: Grouped according to mitochondrial haplotype. N = 178. Variables retained in the model: HFW (0.86), HSP (0,83) and AES (0.80). Grouping resulted in 68.0% correct classifications.