Literature DB >> 19621928

High resolution heteronuclear correlation NMR spectroscopy of an antimicrobial peptide in aligned lipid bilayers: peptide-water interactions at the water-bilayer interface.

Riqiang Fu1, Eric D Gordon, Daniel J Hibbard, Myriam Cotten.   

Abstract

High-resolution two-dimensional (2D) (1)H-(15)N heteronuclear correlation (HETCOR) spectroscopy has been used to characterize the structure and dynamics of (15)N-backbone labeled antimicrobial piscidin 1 (p1) oriented in "native-like" hydrated lipid bilayers. Piscidin belongs to a family of amphipatic cationic antimicrobial peptides, which are membrane-active and have broad spectrum antimicrobial activity on bacteria. When the (1)H chemical shifts are encoded by the (1)H-(15)N dipolar couplings, 2D dipolar-encoded HETCOR (i.e., de-HETCOR) solid-state NMR spectra yield high resolution (1)H and (15)N chemical shifts as well as (1)H-(15)N heteronuclear dipolar couplings. Several advantages of HETCOR and de-HETCOR techniques that emerge from our investigations could facilitate the atomic-level investigations of structure-function relationships in membrane-active peptides and membrane-bound species. First, the de-HETCOR NMR spectrum of a ten-site (15)N-labeled sample of p1 aligned in hydrated lipid bilayers can resolve resonances that are overlapped in the standard HETCOR spectrum. Second, the resolution in de-HETCOR spectra of p1 improves significantly at higher magnetic field due to an enhanced alignment that improves spectrum definition uniformly. Third, the HETCOR spectrum of (15)N-K(14) p1 oriented in hydrated lipid bilayers displays not only the expected crosscorrelation between the chemical shifts of bonded amide(1)H and (15)N spins but also a cross peak between the (1)H chemical shift from bulk water and the (15)N chemical shift from the labeled amide nitrogen. This information provides new insights into the intermolecular interactions of an amphipathic antimicrobial peptide optimized to partition at the water-bilayer interface and may have implications at the biological level.

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Year:  2009        PMID: 19621928      PMCID: PMC2752699          DOI: 10.1021/ja903999g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

Review 1.  Diversity of antimicrobial peptides and their mechanisms of action.

Authors:  R M Epand; H J Vogel
Journal:  Biochim Biophys Acta       Date:  1999-12-15

2.  Imaging membrane protein helical wheels.

Authors:  J Wang; J Denny; C Tian; S Kim; Y Mo; F Kovacs; Z Song; K Nishimura; Z Gan; R Fu; J R Quine; T A Cross
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

3.  A solid-state NMR index of helical membrane protein structure and topology.

Authors:  F M Marassi; S J Opella
Journal:  J Magn Reson       Date:  2000-05       Impact factor: 2.229

4.  Transmembrane domain of M2 protein from influenza A virus studied by solid-state (15)N polarization inversion spin exchange at magic angle NMR.

Authors:  Z Song; F A Kovacs; J Wang; J K Denny; S C Shekar; J R Quine; T A Cross
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

5.  Action of antimicrobial peptides: two-state model.

Authors:  H W Huang
Journal:  Biochemistry       Date:  2000-07-25       Impact factor: 3.162

6.  Peptide antibiotics in mast cells of fish.

Authors:  U Silphaduang; E J Noga
Journal:  Nature       Date:  2001-11-15       Impact factor: 49.962

7.  Antimicrobial peptides of multicellular organisms.

Authors:  Michael Zasloff
Journal:  Nature       Date:  2002-01-24       Impact factor: 49.962

Review 8.  Cationic peptides: distribution and mechanisms of resistance.

Authors:  Deirdre A Devine; Robert E W Hancock
Journal:  Curr Pharm Des       Date:  2002       Impact factor: 3.116

9.  Identification of novel antibacterial peptides by chemoinformatics and machine learning.

Authors:  Christopher D Fjell; Håvard Jenssen; Kai Hilpert; Warren A Cheung; Nelly Panté; Robert E W Hancock; Artem Cherkasov
Journal:  J Med Chem       Date:  2009-04-09       Impact factor: 7.446

10.  Discovery and characterization of two isoforms of moronecidin, a novel antimicrobial peptide from hybrid striped bass.

Authors:  Xavier Lauth; Hiroko Shike; Jane C Burns; Mark E Westerman; Vaughn E Ostland; James M Carlberg; Jon C Van Olst; Victor Nizet; Steven W Taylor; Chisato Shimizu; Philippe Bulet
Journal:  J Biol Chem       Date:  2001-12-05       Impact factor: 5.157

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  12 in total

1.  Amphipathic antimicrobial piscidin in magnetically aligned lipid bilayers.

Authors:  Anna A De Angelis; Christopher V Grant; Matthew K Baxter; Jason A McGavin; Stanley J Opella; Myriam L Cotten
Journal:  Biophys J       Date:  2011-09-07       Impact factor: 4.033

2.  Proton evolved local field solid-state nuclear magnetic resonance using Hadamard encoding: theory and application to membrane proteins.

Authors:  T Gopinath; Kaustubh R Mote; Gianluigi Veglia
Journal:  J Chem Phys       Date:  2011-08-21       Impact factor: 3.488

3.  Beyond Structural Biology to Functional Biology: Solid-State NMR Experiments and Strategies for Understanding the M2 Proton Channel Conductance.

Authors:  Huajun Qin; Yimin Miao; Timothy A Cross; Riqiang Fu
Journal:  J Phys Chem B       Date:  2017-05-02       Impact factor: 2.991

4.  Frequency-selective heteronuclear dephasing and selective carbonyl labeling to deconvolute crowded spectra of membrane proteins by magic angle spinning NMR.

Authors:  Nathaniel J Traaseth; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2011-03-17       Impact factor: 2.229

5.  The host-defense peptide piscidin P1 reorganizes lipid domains in membranes and decreases activation energies in mechanosensitive ion channels.

Authors:  Fatih Comert; Alexander Greenwood; Joseph Maramba; Roderico Acevedo; Laura Lucas; Thulasi Kulasinghe; Leah S Cairns; Yi Wen; Riqiang Fu; Janet Hammer; Jack Blazyk; Sergei Sukharev; Myriam L Cotten; Mihaela Mihailescu
Journal:  J Biol Chem       Date:  2019-10-16       Impact factor: 5.157

6.  Structure and Function in Antimicrobial Piscidins: Histidine Position, Directionality of Membrane Insertion, and pH-Dependent Permeabilization.

Authors:  Mihaela Mihailescu; Mirco Sorci; Jolita Seckute; Vitalii I Silin; Janet Hammer; B Scott Perrin; Jorge I Hernandez; Nedzada Smajic; Akritee Shrestha; Kimberly A Bogardus; Alexander I Greenwood; Riqiang Fu; Jack Blazyk; Richard W Pastor; Linda K Nicholson; Georges Belfort; Myriam L Cotten
Journal:  J Am Chem Soc       Date:  2019-06-13       Impact factor: 15.419

7.  Improved 1H amide resonance line narrowing in oriented sample solid-state NMR of membrane proteins in phospholipid bilayers.

Authors:  George J Lu; Sang Ho Park; Stanley J Opella
Journal:  J Magn Reson       Date:  2012-04-26       Impact factor: 2.229

8.  On the performance of spin diffusion NMR techniques in oriented solids: prospects for resonance assignments and distance measurements from separated local field experiments.

Authors:  Nathaniel J Traaseth; T Gopinath; Gianluigi Veglia
Journal:  J Phys Chem B       Date:  2010-11-04       Impact factor: 2.991

9.  (15)N CSA tensors and (15)N-(1)H dipolar couplings of protein hydrophobic core residues investigated by static solid-state NMR.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky; Riqiang Fu
Journal:  J Magn Reson       Date:  2015-09-03       Impact factor: 2.229

10.  Probing Hydronium Ion Histidine NH Exchange Rate Constants in the M2 Channel via Indirect Observation of Dipolar-Dephased 15N Signals in Magic-Angle-Spinning NMR.

Authors:  Riqiang Fu; Yimin Miao; Huajun Qin; Timothy A Cross
Journal:  J Am Chem Soc       Date:  2016-12-01       Impact factor: 15.419

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