Literature DB >> 19610672

Aromatic interactions promote self-association of collagen triple-helical peptides to higher-order structures.

Karunakar Kar1, Sajjad Ibrar, Vikas Nanda, Todd M Getz, Satya P Kunapuli, Barbara Brodsky.   

Abstract

Aromatic residues are relatively rare within the collagen triple helix, but they appear to play a specialized role in higher-order structure and function. The role of aromatic amino acids in the self-assembly of triple-helical peptides was investigated in terms of the kinetics of self-association, the nature of aggregated species formed, and the ability of these species to activate platelet aggregation. The presence of aromatic residues on both ends of a type IV collagen model peptide is observed to greatly accelerate the kinetics of self-association, decreasing the lag time and leading to insoluble, well-defined linear fibrils as well as small soluble aggregates. Both macroscopic visible aggregates and small multimolecular complexes in solution are capable of inducing platelet aggregation through the glycoprotein VI receptor on platelets. Proline-aromatic CH...pi interactions are often observed within globular proteins and in protein complexes, and examination of molecular packing in the crystal structure of the integrin binding collagen peptide shows Phe interacts with Pro/Hyp in a neighboring triple-helical molecule. An intermolecular interaction between aromatic amino acids and imino acids within the triple helix is also supported by the observed inhibitory effect of isolated Phe amino acids on the self-association of (Pro-Hyp-Gly)(10). Given the high fraction of Pro and Hyp residues on the surface of collagen molecules, it is likely that imino acid-aromatic CH...pi interactions are important in formation of higher-order structure. We suggest that the catalysis of type I collagen fibrillogenesis by nonhelical telopeptides is due to specific intermolecular CH...pi interactions between aromatic residues in the telopeptides and Pro/Hyp residues within the triple helix.

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Year:  2009        PMID: 19610672      PMCID: PMC2784932          DOI: 10.1021/bi900496m

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  40 in total

1.  Does the triple helical domain of type I collagen encode molecular recognition and fiber assembly while telopeptides serve as catalytic domains? Effect of proteolytic cleavage on fibrillogenesis and on collagen-collagen interaction in fibers.

Authors:  N Kuznetsova; S Leikin
Journal:  J Biol Chem       Date:  1999-12-17       Impact factor: 5.157

2.  Structural bases of collagen stabilization induced by proline hydroxylation.

Authors:  L Vitagliano; R Berisio; L Mazzarella; A Zagari
Journal:  Biopolymers       Date:  2001-04-15       Impact factor: 2.505

3.  C-H...pi-interactions in proteins.

Authors:  M Brandl; M S Weiss; A Jabs; J Sühnel; R Hilgenfeld
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

Review 4.  Insights on the conformational stability of collagen.

Authors:  Cara L Jenkins; Ronald T Raines
Journal:  Nat Prod Rep       Date:  2002-02       Impact factor: 13.423

5.  D-periodic collagen-mimetic microfibers.

Authors:  Shyam Rele; Yuhua Song; Robert P Apkarian; Zheng Qu; Vincent P Conticello; Elliot L Chaikof
Journal:  J Am Chem Soc       Date:  2007-11-07       Impact factor: 15.419

6.  Artificial collagen gels via self-assembly of de novo designed peptides.

Authors:  Chisato M Yamazaki; Shinichi Asada; Kouki Kitagawa; Takaki Koide
Journal:  Biopolymers       Date:  2008       Impact factor: 2.505

7.  Thrombogenic collagen-mimetic peptides: Self-assembly of triple helix-based fibrils driven by hydrophobic interactions.

Authors:  Mabel A Cejas; William A Kinney; Cailin Chen; Jeremy G Vinter; Harold R Almond; Karin M Balss; Cynthia A Maryanoff; Ute Schmidt; Michael Breslav; Andrew Mahan; Eilyn Lacy; Bruce E Maryanoff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-16       Impact factor: 11.205

8.  Hydrogen bonds with pi-acceptors in proteins: frequencies and role in stabilizing local 3D structures.

Authors:  T Steiner; G Koellner
Journal:  J Mol Biol       Date:  2001-01-19       Impact factor: 5.469

9.  Sequence dependence of kinetics and morphology of collagen model peptide self-assembly into higher order structures.

Authors:  Karunakar Kar; Yuh-Hwa Wang; Barbara Brodsky
Journal:  Protein Sci       Date:  2008-04-25       Impact factor: 6.725

Review 10.  Cell-collagen interactions: the use of peptide Toolkits to investigate collagen-receptor interactions.

Authors:  Richard W Farndale; Ton Lisman; Dominique Bihan; Samir Hamaia; Christiane S Smerling; Nicholas Pugh; Antonios Konitsiotis; Birgit Leitinger; Philip G de Groot; Gavin E Jarvis; Nicolas Raynal
Journal:  Biochem Soc Trans       Date:  2008-04       Impact factor: 5.407

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  32 in total

1.  Multi-hierarchical self-assembly of a collagen mimetic peptide from triple helix to nanofibre and hydrogel.

Authors:  Lesley E R O'Leary; Jorge A Fallas; Erica L Bakota; Marci K Kang; Jeffrey D Hartgerink
Journal:  Nat Chem       Date:  2011-08-28       Impact factor: 24.427

2.  Effect of aqueous ethanol on the triple helical structure of collagen.

Authors:  Arun Gopinath; Samala Murali Mohan Reddy; Balaraman Madhan; Ganesh Shanmguam; Jonnalagadda Raghava Rao
Journal:  Eur Biophys J       Date:  2014-11-07       Impact factor: 1.733

3.  The self-assembly of a mini-fibril with axial periodicity from a designed collagen-mimetic triple helix.

Authors:  Parminder Jeet Kaur; Rebecca Strawn; Hanying Bai; Ke Xu; Gabriel Ordas; Hiroshi Matsui; Yujia Xu
Journal:  J Biol Chem       Date:  2015-02-11       Impact factor: 5.157

4.  How electrostatic networks modulate specificity and stability of collagen.

Authors:  Hongning Zheng; Cheng Lu; Jun Lan; Shilong Fan; Vikas Nanda; Fei Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-29       Impact factor: 11.205

5.  Empirical estimation of local dielectric constants: Toward atomistic design of collagen mimetic peptides.

Authors:  Douglas H Pike; Vikas Nanda
Journal:  Biopolymers       Date:  2015-07       Impact factor: 2.505

Review 6.  Crafting of functional biomaterials by directed molecular self-assembly of triple helical peptide building blocks.

Authors:  Jayati Banerjee; Helena S Azevedo
Journal:  Interface Focus       Date:  2017-10-20       Impact factor: 3.906

7.  Aromatic-proline interactions: electronically tunable CH/π interactions.

Authors:  Neal J Zondlo
Journal:  Acc Chem Res       Date:  2012-11-13       Impact factor: 22.384

8.  Self-assembly of left- and right-handed molecular screws.

Authors:  Fei Xu; I John Khan; Kenneth McGuinness; Avanish S Parmar; Teresita Silva; N Sanjeeva Murthy; Vikas Nanda
Journal:  J Am Chem Soc       Date:  2013-12-03       Impact factor: 15.419

9.  Selective assembly of a high stability AAB collagen heterotrimer.

Authors:  Lesley E Russell; Jorge A Fallas; Jeffrey D Hartgerink
Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

10.  Location of 3-hydroxyproline residues in collagen types I, II, III, and V/XI implies a role in fibril supramolecular assembly.

Authors:  Mary Ann Weis; David M Hudson; Lammy Kim; Melissa Scott; Jiann-Jiu Wu; David R Eyre
Journal:  J Biol Chem       Date:  2009-11-23       Impact factor: 5.157

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