Literature DB >> 29844169

How electrostatic networks modulate specificity and stability of collagen.

Hongning Zheng1, Cheng Lu1, Jun Lan2, Shilong Fan3, Vikas Nanda4,5, Fei Xu6.   

Abstract

One-quarter of the 28 types of natural collagen exist as heterotrimers. The oligomerization state of collagen affects the structure and mechanics of the extracellular matrix, providing essential cues to modulate biological and pathological processes. A lack of high-resolution structural information limits our mechanistic understanding of collagen heterospecific self-assembly. Here, the 1.77-Å resolution structure of a synthetic heterotrimer demonstrates the balance of intermolecular electrostatics and hydrogen bonding that affects collagen stability and heterospecificity of assembly. Atomistic simulations and mutagenesis based on the solved structure are used to explore the contributions of specific interactions to energetics. A predictive model of collagen stability and specificity is developed for engineering novel collagen structures.

Entities:  

Keywords:  cooperativity; molecular dynamics; protein design; self-assembly; triple helix

Mesh:

Substances:

Year:  2018        PMID: 29844169      PMCID: PMC6004475          DOI: 10.1073/pnas.1802171115

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  68 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  C-H...pi-interactions in proteins.

Authors:  M Brandl; M S Weiss; A Jabs; J Sühnel; R Hilgenfeld
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

3.  Nanohedra: using symmetry to design self assembling protein cages, layers, crystals, and filaments.

Authors:  J E Padilla; C Colovos; T O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

4.  Logical computation using algorithmic self-assembly of DNA triple-crossover molecules.

Authors:  C Mao; T H LaBean; J H Relf; N C Seeman
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

5.  Type I collagen is thermally unstable at body temperature.

Authors:  E Leikina; M V Mertts; N Kuznetsova; S Leikin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

6.  Sequence dependent conformational variations of collagen triple-helical structure.

Authors:  R Z Kramer; J Bella; P Mayville; B Brodsky; H M Berman
Journal:  Nat Struct Biol       Date:  1999-05

7.  Conformational implications of amino acid sequence regularities in collagen.

Authors:  G Salem; W Traub
Journal:  FEBS Lett       Date:  1975-03-01       Impact factor: 4.124

8.  Computational de novo design, and characterization of an A(2)B(2) diiron protein.

Authors:  Christopher M Summa; Michael M Rosenblatt; Jae-Kyoung Hong; James D Lear; William F DeGrado
Journal:  J Mol Biol       Date:  2002-08-30       Impact factor: 5.469

9.  Heterotrimeric collagen peptides containing functional epitopes. Synthesis of single-stranded collagen type I peptides related to the collagenase cleavage site.

Authors:  J Ottl; H J Musiol; L Moroder
Journal:  J Pept Sci       Date:  1999-02       Impact factor: 1.905

10.  Staggered molecular packing in crystals of a collagen-like peptide with a single charged pair.

Authors:  R Z Kramer; M G Venugopal; J Bella; P Mayville; B Brodsky; H M Berman
Journal:  J Mol Biol       Date:  2000-09-01       Impact factor: 5.469

View more
  6 in total

1.  Modeling Fibrillogenesis of Collagen-Mimetic Molecules.

Authors:  Anne E Hafner; Noemi G Gyori; Ciaran A Bench; Luke K Davis; Anđela Šarić
Journal:  Biophys J       Date:  2020-09-23       Impact factor: 4.033

Review 2.  Recent trends in protein and peptide-based biomaterials for advanced drug delivery.

Authors:  Anastasia Varanko; Soumen Saha; Ashutosh Chilkoti
Journal:  Adv Drug Deliv Rev       Date:  2020-08-29       Impact factor: 15.470

3.  Composition-dependent energetic contribution of complex salt bridges to collagen stability.

Authors:  Tiantian Sun; Shumin Qiang; Cheng Lu; Fei Xu
Journal:  Biophys J       Date:  2021-06-25       Impact factor: 3.699

4.  A cysteine-based molecular code informs collagen C-propeptide assembly.

Authors:  Andrew S DiChiara; Rasia C Li; Patreece H Suen; Azade S Hosseini; Rebecca J Taylor; Alexander F Weickhardt; Diya Malhotra; Darrell R McCaslin; Matthew D Shoulders
Journal:  Nat Commun       Date:  2018-10-11       Impact factor: 14.919

5.  Temperature-controlled electrospray ionization mass spectrometry as a tool to study collagen homo- and heterotrimers.

Authors:  Martin Köhler; Adrien Marchand; Nina B Hentzen; Jasmine Egli; Alina I Begley; Helma Wennemers; Renato Zenobi
Journal:  Chem Sci       Date:  2019-09-03       Impact factor: 9.825

Review 6.  Collagen Mimetic Peptides.

Authors:  Yujia Xu; Michele Kirchner
Journal:  Bioengineering (Basel)       Date:  2021-01-05
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.