Literature DB >> 25673694

The self-assembly of a mini-fibril with axial periodicity from a designed collagen-mimetic triple helix.

Parminder Jeet Kaur1, Rebecca Strawn1, Hanying Bai1, Ke Xu1, Gabriel Ordas1, Hiroshi Matsui1, Yujia Xu2.   

Abstract

In this work we describe the self-assembly of a collagen-like periodic mini-fibril from a recombinant triple helix. The triple helix, designated Col108, is expressed in Escherichia coli using an artificial gene and consists of a 378-residue triple helix domain organized into three pseudo-repeating sequence units. The peptide forms a stable triple helix with a melting temperature of 41 °C. Upon increases of pH and temperature, Col108 self-assembles in solution into smooth mini-fibrils with the cross-striated banding pattern typical of fibrillar collagens. The banding pattern is characterized by an axially repeating feature of ∼35 nm as observed by transmission electron microscopy and atomic force microscopy. Both the negatively stained and the positively stained transmission electron microscopy patterns of the Col108 mini-fibrils are consistent with a staggered arrangement of triple helices having a staggering value of 123 residues, a value closely connected to the size of one repeat sequence unit. A mechanism is proposed for the mini-fibril formation of Col108 in which the axial periodicity is instigated by the built-in sequence periodicity and stabilized by the optimized interactions between the triple helices in a 1-unit staggered arrangement. Lacking hydroxyproline residues and telopeptides, two factors implicated in the fibrillogenesis of native collagen, the Col108 mini-fibrils demonstrate that sequence features of the triple helical domain alone are sufficient to "code" for axially repeating periodicity of fibrils. To our knowledge, Col108 is the first designed triple helix to self-assemble into periodic fibrils and offers a unique opportunity to unravel the specific molecular interactions of collagen fibrillogenesis.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  Collagen Triple Helix; D-Periodic Fibril; Fibril Formation; Peptide Interaction; Protein Aggregation; Protein Assembly; Protein Complex; Protein Design

Mesh:

Substances:

Year:  2015        PMID: 25673694      PMCID: PMC4423709          DOI: 10.1074/jbc.M113.542241

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

1.  Does the triple helical domain of type I collagen encode molecular recognition and fiber assembly while telopeptides serve as catalytic domains? Effect of proteolytic cleavage on fibrillogenesis and on collagen-collagen interaction in fibers.

Authors:  N Kuznetsova; S Leikin
Journal:  J Biol Chem       Date:  1999-12-17       Impact factor: 5.157

2.  The collagen-like peptide (GER)15GPCCG forms pH-dependent covalently linked triple helical trimers.

Authors:  D E Mechling; H P Bachinger
Journal:  J Biol Chem       Date:  2000-05-12       Impact factor: 5.157

3.  Unhydroxylated triple helical collagen I produced in transgenic plants provides new clues on the role of hydroxyproline in collagen folding and fibril formation.

Authors:  S Perret; C Merle; S Bernocco; P Berland; R Garrone; D J Hulmes; M Theisen; F Ruggiero
Journal:  J Biol Chem       Date:  2001-09-13       Impact factor: 5.157

4.  Stabilization of short collagen-like triple helices by protein engineering.

Authors:  S Frank; R A Kammerer; D Mechling; T Schulthess; R Landwehr; J Bann; Y Guo; A Lustig; H P Bächinger; J Engel
Journal:  J Mol Biol       Date:  2001-05-18       Impact factor: 5.469

5.  Collagen stabilization at atomic level: crystal structure of designed (GlyProPro)10foldon.

Authors:  Jörg Stetefeld; Sabine Frank; Margrit Jenny; Therese Schulthess; Richard A Kammerer; Sergei Boudko; Ruth Landwehr; Kenji Okuyama; Jürgen Engel
Journal:  Structure       Date:  2003-03       Impact factor: 5.006

6.  Production of human type I collagen in yeast reveals unexpected new insights into the molecular assembly of collagen trimers.

Authors:  D R Olsen; S D Leigh; R Chang; H McMullin; W Ong; E Tai; G Chisholm; D E Birk; R A Berg; R A Hitzeman; P D Toman
Journal:  J Biol Chem       Date:  2001-03-14       Impact factor: 5.157

7.  Characterization of macromolecular heterogeneity by equilibrium sedimentation techniques.

Authors:  Yujia Xu
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

8.  Action of proteolytic enzymes on tropocollagen and insoluble collagen.

Authors:  M P Drake; P F Davison; S Bump; F O Schmitt
Journal:  Biochemistry       Date:  1966-01       Impact factor: 3.162

9.  Folding mechanism of the triple helix in type-III collagen and type-III pN-collagen. Role of disulfide bridges and peptide bond isomerization.

Authors:  H P Bächinger; P Bruckner; R Timpl; D J Prockop; J Engel
Journal:  Eur J Biochem       Date:  1980-05

10.  Nucleation and propagation of the collagen triple helix in single-chain and trimerized peptides: transition from third to first order kinetics.

Authors:  Sergei Boudko; Sabine Frank; Richard A Kammerer; Jörg Stetefeld; Therese Schulthess; Ruth Landwehr; Ariel Lustig; Hans Peter Bächinger; Jürgen Engel
Journal:  J Mol Biol       Date:  2002-03-29       Impact factor: 5.469

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  4 in total

1.  Using sequence data to predict the self-assembly of supramolecular collagen structures.

Authors:  Anna M Puszkarska; Daan Frenkel; Lucy J Colwell; Melinda J Duer
Journal:  Biophys J       Date:  2022-07-20       Impact factor: 3.699

Review 2.  Segment-Long-Spacing (SLS) and the Polymorphic Structures of Fibrillar Collagen.

Authors:  Yujia Xu; Michele Kirchner
Journal:  Subcell Biochem       Date:  2022

3.  The predominant roles of the sequence periodicity in the self-assembly of collagen-mimetic mini-fibrils.

Authors:  Fangfang Chen; Rebecca Strawn; Yujia Xu
Journal:  Protein Sci       Date:  2019-09       Impact factor: 6.725

Review 4.  Collagen Mimetic Peptides.

Authors:  Yujia Xu; Michele Kirchner
Journal:  Bioengineering (Basel)       Date:  2021-01-05
  4 in total

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