Literature DB >> 19596601

High-resolution solid-state NMR structure of alanyl-prolyl-glycine.

Alexander B Barnes1, Loren B Andreas, Matthias Huber, Ramesh Ramachandran, Patrick C A van der Wel, Mikhail Veshtort, Robert G Griffin, Manish A Mehta.   

Abstract

We present a de novo high-resolution structure of the peptide Alanyl-Prolyl-Glycine using a combination of sensitive solid-state NMR techniques that each yield precise structural constraints. High-quality (13)C-(13)C distance constraints are extracted by fitting rotational resonance width (R(2)W) experiments using Multimode Multipole Floquet Theory and experimental chemical shift anisotropy (CSA) orientations. In this strategy, a structure is first calculated using DANTE-REDOR and torsion angle measurements and the resulting relative CSA orientations are used as an input parameter in the (13)C-(13)C distance calculations. Finally, a refined structure is calculated using all the constraints. We investigate the effect of different structural constraints on structure quality, as determined by comparison to the crystal structure and also self-consistency of the calculated structures. Inclusion of all or subsets of these constraints into CNS calculations resulted in high-quality structures (0.02A backbone RMSD using all 11 constraints).

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19596601      PMCID: PMC4133121          DOI: 10.1016/j.jmr.2009.06.009

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  19 in total

1.  Specification and visualization of anisotropic interaction tensors in polypeptides and numerical simulations in biological solid-state NMR.

Authors:  Mads Bak; Robert Schultz; Thomas Vosegaard; Niels Chr Nielsen
Journal:  J Magn Reson       Date:  2002-01       Impact factor: 2.229

2.  Relative CSA-dipolar orientation from REDOR sidebands.

Authors:  Robert D O'Connor; Jacob Schaefer
Journal:  J Magn Reson       Date:  2002-01       Impact factor: 2.229

3.  De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy.

Authors:  Chad M Rienstra; Lisa Tucker-Kellogg; Christopher P Jaroniec; Morten Hohwy; Bernd Reif; Michael T McMahon; Bruce Tidor; Tomas Lozano-Pérez; Robert G Griffin
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

4.  Inhibition mode of a bisubstrate inhibitor of KDO8P synthase: a frequency-selective REDOR solid-state and solution NMR characterization.

Authors:  Lilia Kaustov; Shifi Kababya; Valery Belakhov; Timor Baasov; Yuval Shoham; Asher Schmidt
Journal:  J Am Chem Soc       Date:  2003-04-16       Impact factor: 15.419

5.  Frequency selective heteronuclear dipolar recoupling in rotating solids: accurate (13)C-(15)N distance measurements in uniformly (13)C,(15)N-labeled peptides.

Authors:  C P Jaroniec; B A Tounge; J Herzfeld; R G Griffin
Journal:  J Am Chem Soc       Date:  2001-04-18       Impact factor: 15.419

6.  Determination of global structure from distance and orientation constraints in biological solids using solid-state NMR spectroscopy.

Authors:  Loren B Andreas; Anil K Mehta; Manish A Mehta
Journal:  J Am Chem Soc       Date:  2007-11-09       Impact factor: 15.419

7.  Rotational resonance NMR: separation of dipolar coupling and zero quantum relaxation.

Authors:  Phillip R Costa; Boqin Sun; Robert G Griffin
Journal:  J Magn Reson       Date:  2003-09       Impact factor: 2.229

8.  13C-13C rotational resonance width distance measurements in uniformly 13C-labeled peptides.

Authors:  Ramesh Ramachandran; Vladimir Ladizhansky; Vikram S Bajaj; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

9.  Dipolar truncation in magic-angle spinning NMR recoupling experiments.

Authors:  Marvin J Bayro; Matthias Huber; Ramesh Ramachandran; Timothy C Davenport; Beat H Meier; Matthias Ernst; Robert G Griffin
Journal:  J Chem Phys       Date:  2009-03-21       Impact factor: 3.488

10.  Diluting abundant spins by isotope edited radio frequency field assisted diffusion.

Authors:  Corey R Morcombe; Vadim Gaponenko; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2004-06-16       Impact factor: 15.419

View more
  9 in total

1.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Low-temperature polymorphic phase transition in a crystalline tripeptide L-Ala-L-Pro-Gly·H2O revealed by adiabatic calorimetry.

Authors:  Alexey V Markin; Evgeny Markhasin; Semen S Sologubov; Qing Zhe Ni; Natalia N Smirnova; Robert G Griffin
Journal:  J Phys Chem B       Date:  2015-01-27       Impact factor: 2.991

3.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

4.  Frequency-selective REDOR and spin-diffusion relays in uniformly labeled whole cells.

Authors:  David M Rice; Joseph A H Romaniuk; Lynette Cegelski
Journal:  Solid State Nucl Magn Reson       Date:  2015-10-14       Impact factor: 2.293

5.  Spinning-rate encoded chemical shift correlations from rotational resonance solid-state NMR experiments.

Authors:  Jun Li; Patrick C A van der Wel
Journal:  J Magn Reson       Date:  2013-02-14       Impact factor: 2.229

6.  Efficient, balanced, transmission line RF circuits by back propagation of common impedance nodes.

Authors:  Evgeny Markhasin; Jianping Hu; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Magn Reson       Date:  2013-03-15       Impact factor: 2.229

7.  Pulsed Electron Decoupling and Strategies for Time Domain Dynamic Nuclear Polarization with Magic Angle Spinning.

Authors:  Edward P Saliba; Erika L Sesti; Nicholas Alaniva; Alexander B Barnes
Journal:  J Phys Chem Lett       Date:  2018-09-12       Impact factor: 6.475

Review 8.  Dihedral Angle Measurements for Structure Determination by Biomolecular Solid-State NMR Spectroscopy.

Authors:  Patrick C A van der Wel
Journal:  Front Mol Biosci       Date:  2021-12-06

9.  Standard Thermodynamic Functions of Tripeptides N-Formyl-l-methionyl-l-leucyl-l-phenylalaninol and N-Formyl-l-methionyl-l-leucyl-l-phenylalanine Methyl Ester.

Authors:  Alexey V Markin; Evgeny Markhasin; Semen S Sologubov; Natalia N Smirnova; Robert G Griffin
Journal:  J Chem Eng Data       Date:  2014-03-13       Impact factor: 2.694

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.