Literature DB >> 19587658

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications.

Douglas J Slotta, Tanya Barrett, Ron Edgar.   

Abstract

Entities:  

Mesh：

Substances：

Year:  2009        PMID： 19587658      PMCID： PMC2745988          DOI： 10.1038/nbt0709-600

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


× No keyword cloud information.
  6 in total

1.  Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.

Authors:  Ron Edgar; Michael Domrachev; Alex E Lash
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

2.  Democratizing proteomics data.

Authors: 
Journal:  Nat Biotechnol       Date:  2007-03       Impact factor: 54.908

Review 3.  PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.

Authors:  Eric W Deutsch; Henry Lam; Ruedi Aebersold
Journal:  EMBO Rep       Date:  2008-05       Impact factor: 8.807

4.  NCBI GEO: archive for high-throughput functional genomic data.

Authors:  Tanya Barrett; Dennis B Troup; Stephen E Wilhite; Pierre Ledoux; Dmitry Rudnev; Carlos Evangelista; Irene F Kim; Alexandra Soboleva; Maxim Tomashevsky; Kimberly A Marshall; Katherine H Phillippy; Patti M Sherman; Rolf N Muertter; Ron Edgar
Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

5.  Human Proteinpedia enables sharing of human protein data.

Authors:  Suresh Mathivanan; Mukhtar Ahmed; Natalie G Ahn; Hainard Alexandre; Ramars Amanchy; Philip C Andrews; Joel S Bader; Brian M Balgley; Marcus Bantscheff; Keiryn L Bennett; Erik Björling; Blagoy Blagoev; Ron Bose; Samir K Brahmachari; Alma S Burlingame; Xosé R Bustelo; Gerard Cagney; Greg T Cantin; Helene L Cardasis; Julio E Celis; Raghothama Chaerkady; Feixia Chu; Philip A Cole; Catherine E Costello; Robert J Cotter; David Crockett; James P DeLany; Angelo M De Marzo; Leroi V DeSouza; Eric W Deutsch; Eric Dransfield; Gerard Drewes; Arnaud Droit; Michael J Dunn; Kojo Elenitoba-Johnson; Rob M Ewing; Jennifer Van Eyk; Vitor Faca; Jayson Falkner; Xiangming Fang; Catherine Fenselau; Daniel Figeys; Pierre Gagné; Cecilia Gelfi; Kris Gevaert; Jeffrey M Gimble; Florian Gnad; Renu Goel; Pavel Gromov; Samir M Hanash; William S Hancock; H C Harsha; Gerald Hart; Faith Hays; Fuchu He; Prashantha Hebbar; Kenny Helsens; Heiko Hermeking; Winston Hide; Karin Hjernø; Denis F Hochstrasser; Oliver Hofmann; David M Horn; Ralph H Hruban; Nieves Ibarrola; Peter James; Ole N Jensen; Pia Hønnerup Jensen; Peter Jung; Kumaran Kandasamy; Indu Kheterpal; Reiko F Kikuno; Ulrike Korf; Roman Körner; Bernhard Kuster; Min-Seok Kwon; Hyoung-Joo Lee; Young-Jin Lee; Michael Lefevre; Minna Lehvaslaiho; Pierre Lescuyer; Fredrik Levander; Megan S Lim; Christian Löbke; Joseph A Loo; Matthias Mann; Lennart Martens; Juan Martinez-Heredia; Mark McComb; James McRedmond; Alexander Mehrle; Rajasree Menon; Christine A Miller; Harald Mischak; S Sujatha Mohan; Riaz Mohmood; Henrik Molina; Michael F Moran; James D Morgan; Robert Moritz; Martine Morzel; David C Muddiman; Anuradha Nalli; J Daniel Navarro; Thomas A Neubert; Osamu Ohara; Rafael Oliva; Gilbert S Omenn; Masaaki Oyama; Young-Ki Paik; Kyla Pennington; Rainer Pepperkok; Balamurugan Periaswamy; Emanuel F Petricoin; Guy G Poirier; T S Keshava Prasad; Samuel O Purvine; B Abdul Rahiman; Prasanna Ramachandran; Y L Ramachandra; Robert H Rice; Jens Rick; Ragna H Ronnholm; Johanna Salonen; Jean-Charles Sanchez; Thierry Sayd; Beerelli Seshi; Kripa Shankari; Shi Jun Sheng; Vivekananda Shetty; K Shivakumar; Richard J Simpson; Ravi Sirdeshmukh; K W Michael Siu; Jeffrey C Smith; Richard D Smith; David J States; Sumio Sugano; Matthew Sullivan; Giulio Superti-Furga; Maarit Takatalo; Visith Thongboonkerd; Jonathan C Trinidad; Mathias Uhlen; Joël Vandekerckhove; Julian Vasilescu; Timothy D Veenstra; José-Manuel Vidal-Taboada; Mauno Vihinen; Robin Wait; Xiaoyue Wang; Stefan Wiemann; Billy Wu; Tao Xu; John R Yates; Jun Zhong; Ming Zhou; Yunping Zhu; Petra Zurbig; Akhilesh Pandey
Journal:  Nat Biotechnol       Date:  2008-02       Impact factor: 54.908

6.  PRIDE: new developments and new datasets.

Authors:  Philip Jones; Richard G Côté; Sang Yun Cho; Sebastian Klie; Lennart Martens; Antony F Quinn; David Thorneycroft; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2007-11-22       Impact factor: 16.971
  6 in total
  17 in total

1.  Meta-analysis for protein identification: a case study on yeast data.

Authors:  Roger Higdon; Winston Haynes; Eugene Kolker
Journal:  OMICS       Date:  2010-06

Review 2.  Generating and navigating proteome maps using mass spectrometry.

Authors:  Christian H Ahrens; Erich Brunner; Ermir Qeli; Konrad Basler; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10-14       Impact factor: 94.444

3.  Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer.

Authors:  Min-Sik Kim; Kumaran Kandasamy; Raghothama Chaerkady; Akhilesh Pandey
Journal:  J Am Soc Mass Spectrom       Date:  2010-04-24       Impact factor: 3.109

Review 4.  A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.

Authors:  Alexey I Nesvizhskii
Journal:  J Proteomics       Date:  2010-09-08       Impact factor: 4.044

5.  Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information.

Authors:  Ken J Auberry; Gary R Kiebel; Matthew E Monroe; Joshua N Adkins; Gordon A Anderson; Richard D Smith
Journal:  J Proteomics Bioinform       Date:  2010-01

6.  mspecLINE: bridging knowledge of human disease with the proteome.

Authors:  Jeremy Handcock; Eric W Deutsch; John Boyle
Journal:  BMC Med Genomics       Date:  2010-03-10       Impact factor: 3.063

Review 7.  Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.

Authors:  Juan Antonio Vizcaíno; Joseph M Foster; Lennart Martens
Journal:  J Proteomics       Date:  2010-07-06       Impact factor: 4.044

8.  NCBI Peptidome: a new repository for mass spectrometry proteomics data.

Authors:  Li Ji; Tanya Barrett; Oluwabukunmi Ayanbule; Dennis B Troup; Dmitry Rudnev; Rolf N Muertter; Maxim Tomashevsky; Alexandra Soboleva; Douglas J Slotta
Journal:  Nucleic Acids Res       Date:  2009-11-26       Impact factor: 16.971

9.  The Proteomics Identifications database: 2010 update.

Authors:  Juan Antonio Vizcaíno; Richard Côté; Florian Reisinger; Harald Barsnes; Joseph M Foster; Jonathan Rameseder; Henning Hermjakob; Lennart Martens
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

10.  The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013.

Authors:  Juan Antonio Vizcaíno; Richard G Côté; Attila Csordas; José A Dianes; Antonio Fabregat; Joseph M Foster; Johannes Griss; Emanuele Alpi; Melih Birim; Javier Contell; Gavin O'Kelly; Andreas Schoenegger; David Ovelleiro; Yasset Pérez-Riverol; Florian Reisinger; Daniel Ríos; Rui Wang; Henning Hermjakob
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.