Literature DB >> 20585472

Omics.pnl.gov: A Portal for the Distribution and Sharing of Multi-Disciplinary Pan-Omics Information.

Ken J Auberry1, Gary R Kiebel, Matthew E Monroe, Joshua N Adkins, Gordon A Anderson, Richard D Smith.   

Abstract

Entities:  

Year:  2010        PMID： 20585472      PMCID： PMC2888287          DOI： 10.4172/jpb.1000114

Source DB:  PubMed          Journal:  J Proteomics Bioinform        ISSN： 0974-276X


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  16 in total

1.  An accurate mass tag strategy for quantitative and high-throughput proteome measurements.

Authors:  Richard D Smith; Gordon A Anderson; Mary S Lipton; Ljiljana Pasa-Tolic; Yufeng Shen; Thomas P Conrads; Timothy D Veenstra; Harold R Udseth
Journal:  Proteomics       Date:  2002-05       Impact factor: 3.984

2.  PRIDE: the proteomics identifications database.

Authors:  Lennart Martens; Henning Hermjakob; Philip Jones; Marcin Adamski; Chris Taylor; David States; Kris Gevaert; Joël Vandekerckhove; Rolf Apweiler
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

3.  Challenges and opportunities in proteomics data analysis.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2006-08-08       Impact factor: 5.911

4.  PRISM: a data management system for high-throughput proteomics.

Authors:  Gary R Kiebel; Ken J Auberry; Navdeep Jaitly; David A Clark; Matthew E Monroe; Elena S Peterson; Nikola Tolić; Gordon A Anderson; Richard D Smith
Journal:  Proteomics       Date:  2006-03       Impact factor: 3.984

5.  MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.

Authors:  Matthew E Monroe; Jason L Shaw; Don S Daly; Joshua N Adkins; Richard D Smith
Journal:  Comput Biol Chem       Date:  2008-02-26       Impact factor: 2.877

6.  Analysis of the Salmonella typhimurium proteome through environmental response toward infectious conditions.

Authors:  Joshua N Adkins; Heather M Mottaz; Angela D Norbeck; Jean K Gustin; Joanne Rue; Therese R W Clauss; Samuel O Purvine; Karin D Rodland; Fred Heffron; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2006-05-08       Impact factor: 5.911

7.  Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

Authors:  M P Washburn; D Wolters; J R Yates
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

8.  NCBI Peptidome: a new public repository for mass spectrometry peptide identifications.

Authors:  Douglas J Slotta; Tanya Barrett; Ron Edgar
Journal:  Nat Biotechnol       Date:  2009-07       Impact factor: 54.908

9.  The PeptideAtlas project.

Authors:  Frank Desiere; Eric W Deutsch; Nichole L King; Alexey I Nesvizhskii; Parag Mallick; Jimmy Eng; Sharon Chen; James Eddes; Sandra N Loevenich; Ruedi Aebersold
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.

Authors:  Navdeep Jaitly; Anoop Mayampurath; Kyle Littlefield; Joshua N Adkins; Gordon A Anderson; Richard D Smith
Journal:  BMC Bioinformatics       Date:  2009-03-17       Impact factor: 3.169
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  3 in total

1.  In silico identification software (ISIS): a machine learning approach to tandem mass spectral identification of lipids.

Authors:  Lars J Kangas; Thomas O Metz; Giorgis Isaac; Brian T Schrom; Bojana Ginovska-Pangovska; Luning Wang; Li Tan; Robert R Lewis; John H Miller
Journal:  Bioinformatics       Date:  2012-05-15       Impact factor: 6.937

2.  Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.

Authors:  Aarash Bordbar; Monica L Mo; Ernesto S Nakayasu; Alexandra C Schrimpe-Rutledge; Young-Mo Kim; Thomas O Metz; Marcus B Jones; Bryan C Frank; Richard D Smith; Scott N Peterson; Daniel R Hyduke; Joshua N Adkins; Bernhard O Palsson
Journal:  Mol Syst Biol       Date:  2012-06-26       Impact factor: 11.429

3.  Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium.

Authors:  Charles Ansong; Nikola Tolić; Samuel O Purvine; Steffen Porwollik; Marcus Jones; Hyunjin Yoon; Samuel H Payne; Jessica L Martin; Meagan C Burnet; Matthew E Monroe; Pratap Venepally; Richard D Smith; Scott N Peterson; Fred Heffron; Michael McClelland; Joshua N Adkins
Journal:  BMC Genomics       Date:  2011-08-25       Impact factor: 3.969
  3 in total

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