Literature DB >> 19582558

Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls.

Nina Malchus1, Matthias Weiss.   

Abstract

Anomalous protein diffusion has been frequently observed in intracellular fluids and on membranes of living cells. Indeed, a large variety of specimen, from bacteriae to mammalian cells, and several non-invasive measurement techniques, e.g. fluorescence correlation spectroscopy, have revealed that the mean square displacement (MSD) of proteins in vivo is often characterized by an anomalous power-law increase mean value of tau(t)(2) mean value of ~ t(alpha) with 0.5 < alpha </= 0.8. Here, we review these results with a particular focus on fluorescence correlation spectroscopy, and we report on possible causes of variations of the anomaly degree alpha. Moreover, we highlight generic consequences of anomalous diffusion that are likely to play an important role in the cellular context.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19582558     DOI: 10.1007/s10895-009-0517-4

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  39 in total

1.  Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy.

Authors:  M Wachsmuth; W Waldeck; J Langowski
Journal:  J Mol Biol       Date:  2000-05-12       Impact factor: 5.469

2.  Fluorescence correlation spectroscopy in small cytosolic compartments depends critically on the diffusion model used.

Authors:  A Gennerich; D Schild
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

3.  Anomalous diffusion of major histocompatibility complex class I molecules on HeLa cells determined by single particle tracking.

Authors:  P R Smith; I E Morrison; K M Wilson; N Fernández; R J Cherry
Journal:  Biophys J       Date:  1999-06       Impact factor: 4.033

4.  Anomalous diffusion probes microstructure dynamics of entangled F-actin networks.

Authors:  I Y Wong; M L Gardel; D R Reichman; Eric R Weeks; M T Valentine; A R Bausch; D A Weitz
Journal:  Phys Rev Lett       Date:  2004-04-29       Impact factor: 9.161

5.  Anomalous diffusion of proteins due to molecular crowding.

Authors:  Daniel S Banks; Cécile Fradin
Journal:  Biophys J       Date:  2005-08-19       Impact factor: 4.033

6.  Sampling the cell with anomalous diffusion - the discovery of slowness.

Authors:  Gernot Guigas; Matthias Weiss
Journal:  Biophys J       Date:  2007-09-07       Impact factor: 4.033

7.  Random time-scale invariant diffusion and transport coefficients.

Authors:  Y He; S Burov; R Metzler; E Barkai
Journal:  Phys Rev Lett       Date:  2008-07-28       Impact factor: 9.161

8.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

9.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

10.  Long-range nonanomalous diffusion of quantum dot-labeled aquaporin-1 water channels in the cell plasma membrane.

Authors:  Jonathan M Crane; A S Verkman
Journal:  Biophys J       Date:  2007-09-21       Impact factor: 4.033

View more
  21 in total

Review 1.  Localization and dynamics of nuclear speckles in plants.

Authors:  Anireddy S N Reddy; Irene S Day; Janett Göhring; Andrea Barta
Journal:  Plant Physiol       Date:  2011-11-01       Impact factor: 8.340

2.  Anomalous diffusion reports on the interaction of misfolded proteins with the quality control machinery in the endoplasmic reticulum.

Authors:  Nina Malchus; Matthias Weiss
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

3.  Geometry-controlled kinetics.

Authors:  O Bénichou; C Chevalier; J Klafter; B Meyer; R Voituriez
Journal:  Nat Chem       Date:  2010-04-18       Impact factor: 24.427

4.  Inferring diffusion dynamics from FCS in heterogeneous nuclear environments.

Authors:  Konstantinos Tsekouras; Amanda P Siegel; Richard N Day; Steve Pressé
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

5.  Anomalous diffusion of brain metabolites evidenced by diffusion-weighted magnetic resonance spectroscopy in vivo.

Authors:  Charlotte Marchadour; Emmanuel Brouillet; Philippe Hantraye; Vincent Lebon; Julien Valette
Journal:  J Cereb Blood Flow Metab       Date:  2012-08-29       Impact factor: 6.200

6.  Resolving a paradox of anomalous scalings in the diffusion of granular materials.

Authors:  Ivan C Christov; Howard A Stone
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-19       Impact factor: 11.205

Review 7.  Wanted: a positive control for anomalous subdiffusion.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2012-12-18       Impact factor: 4.033

8.  The shape of protein crowders is a major determinant of protein diffusion.

Authors:  Jessica Balbo; Paolo Mereghetti; Dirk-Peter Herten; Rebecca C Wade
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

Review 9.  Out of the Randomness: Correlating Noise in Biological Systems.

Authors:  Maddalena Collini; Margaux Bouzin; Giuseppe Chirico
Journal:  Biophys J       Date:  2018-02-21       Impact factor: 4.033

10.  Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.

Authors:  Ignacio Izeddin; Vincent Récamier; Lana Bosanac; Ibrahim I Cissé; Lydia Boudarene; Claire Dugast-Darzacq; Florence Proux; Olivier Bénichou; Raphaël Voituriez; Olivier Bensaude; Maxime Dahan; Xavier Darzacq
Journal:  Elife       Date:  2014-06-12       Impact factor: 8.140

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.