Literature DB >> 17827216

Sampling the cell with anomalous diffusion - the discovery of slowness.

Gernot Guigas1, Matthias Weiss.   

Abstract

Diffusion-mediated searching for interaction partners is an ubiquitous process in cell biology. Transcription factors, for example, search specific DNA sequences, signaling proteins aim at interacting with specific cofactors, and peripheral membrane proteins try to dock to membrane domains. Brownian motion, however, is affected by molecular crowding that induces anomalous diffusion (so-called subdiffusion) of proteins and larger structures, thereby compromising diffusive transport and the associated sampling processes. Contrary to the naive expectation that subdiffusion obstructs cellular processes, we show here by computer simulations that subdiffusion rather increases the probability of finding a nearby target. Consequently, important events like protein complex formation and signal propagation are enhanced as compared to normal diffusion. Hence, cells indeed benefit from their crowded internal state and the associated anomalous diffusion.

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Year:  2007        PMID: 17827216      PMCID: PMC2134854          DOI: 10.1529/biophysj.107.117044

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

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Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

2.  Optimizing the encounter rate in biological interactions: Lévy versus Brownian strategies.

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Journal:  Trends Cell Biol       Date:  2004-05       Impact factor: 20.808

5.  Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells.

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Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

6.  Anomalous diffusion of proteins due to molecular crowding.

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7.  Physical nature of bacterial cytoplasm.

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Journal:  EMBO Rep       Date:  2003-09-19       Impact factor: 8.807

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-11       Impact factor: 11.205

Review 10.  ER-to-Golgi transport: COP I and COP II function (Review).

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Journal:  Mol Membr Biol       Date:  2003 Jul-Sep       Impact factor: 2.857

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  51 in total

1.  Chromosome dynamics, molecular crowding, and diffusion in the interphase cell nucleus: a Monte Carlo lattice simulation study.

Authors:  Christian C Fritsch; Jörg Langowski
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

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3.  Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium.

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Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

4.  Elucidating anomalous protein diffusion in living cells with fluorescence correlation spectroscopy-facts and pitfalls.

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Journal:  J Fluoresc       Date:  2009-07-07       Impact factor: 2.217

5.  Molecular crowding affects diffusion and binding of nuclear proteins in heterochromatin and reveals the fractal organization of chromatin.

Authors:  Aurélien Bancaud; Sébastien Huet; Nathalie Daigle; Julien Mozziconacci; Joël Beaudouin; Jan Ellenberg
Journal:  EMBO J       Date:  2009-12-16       Impact factor: 11.598

6.  Correlating anomalous diffusion with lipid bilayer membrane structure using single molecule tracking and atomic force microscopy.

Authors:  Michael J Skaug; Roland Faller; Marjorie L Longo
Journal:  J Chem Phys       Date:  2011-06-07       Impact factor: 3.488

7.  Protein self-diffusion in crowded solutions.

Authors:  Felix Roosen-Runge; Marcus Hennig; Fajun Zhang; Robert M J Jacobs; Michael Sztucki; Helmut Schober; Tilo Seydel; Frank Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

8.  Random Motion of Chromatin Is Influenced by Lamin A Interconnections.

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Journal:  Biophys J       Date:  2018-05-11       Impact factor: 4.033

9.  Quantifying the effects of elastic collisions and non-covalent binding on glutamate receptor trafficking in the post-synaptic density.

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Journal:  PLoS Comput Biol       Date:  2010-05-13       Impact factor: 4.475

10.  Diffusion, crowding & protein stability in a dynamic molecular model of the bacterial cytoplasm.

Authors:  Sean R McGuffee; Adrian H Elcock
Journal:  PLoS Comput Biol       Date:  2010-03-05       Impact factor: 4.475

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