Literature DB >> 29477335

Out of the Randomness: Correlating Noise in Biological Systems.

Maddalena Collini1, Margaux Bouzin2, Giuseppe Chirico3.   

Abstract

The study of the dynamics of biological systems requires one to follow relaxation processes in time with micron-size spatial resolution. This need has led to the development of different fluorescence correlation techniques with high spatial resolution and a tremendous (from nanoseconds to seconds) temporal dynamic range. Spatiotemporal information can be obtained even on complex dynamic processes whose time evolution is not forecast by simple Brownian diffusion. Our discussion of the most recent applications of image correlation spectroscopy to the study of anomalous sub- or superdiffusion suggests that this field still requires the development of multidimensional image analyses based on analytical models or numerical simulations. We focus in particular on the framework of spatiotemporal image correlation spectroscopy and examine the critical steps in getting information on anomalous diffusive processes from the correlation maps. We point out how a dual space-time correlative analysis, in both the direct and the Fourier space, can provide quantitative information on superdiffusional processes when these are analyzed through an empirical model based on intermittent active dynamics. We believe that this dual space-time analysis, potentially amenable to mathematical treatment and to the exact fit of experimental data, could be extended to include the rich phenomenology of subdiffusive processes, thereby quantifying relevant parameters for the various motivating biological problems of interest.
Copyright © 2018. Published by Elsevier Inc.

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Mesh:

Year:  2018        PMID: 29477335      PMCID: PMC6129560          DOI: 10.1016/j.bpj.2018.01.034

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  53 in total

1.  Anomalous diffusion of fluorescent probes inside living cell nuclei investigated by spatially-resolved fluorescence correlation spectroscopy.

Authors:  M Wachsmuth; W Waldeck; J Langowski
Journal:  J Mol Biol       Date:  2000-05-12       Impact factor: 5.469

2.  Chromosome dynamics, molecular crowding, and diffusion in the interphase cell nucleus: a Monte Carlo lattice simulation study.

Authors:  Christian C Fritsch; Jörg Langowski
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

Review 3.  Crowding, diffusion, and biochemical reactions.

Authors:  Matthias Weiss
Journal:  Int Rev Cell Mol Biol       Date:  2014       Impact factor: 6.813

4.  Brownian dynamics simulations of supercoiled DNA with bent sequences.

Authors:  G Chirico; J Langowski
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

5.  Ergodic and nonergodic processes coexist in the plasma membrane as observed by single-molecule tracking.

Authors:  Aubrey V Weigel; Blair Simon; Michael M Tamkun; Diego Krapf
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-04       Impact factor: 11.205

6.  Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation.

Authors:  H Merlitz; K Rippe; K V Klenin; J Langowski
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

7.  Memoryless self-reinforcing directionality in endosomal active transport within living cells.

Authors:  Kejia Chen; Bo Wang; Steve Granick
Journal:  Nat Mater       Date:  2015-03-30       Impact factor: 43.841

8.  Diffusing diffusivity: a model for anomalous, yet Brownian, diffusion.

Authors:  Mykyta V Chubynsky; Gary W Slater
Journal:  Phys Rev Lett       Date:  2014-08-27       Impact factor: 9.161

9.  Anomalous diffusion models and their properties: non-stationarity, non-ergodicity, and ageing at the centenary of single particle tracking.

Authors:  Ralf Metzler; Jae-Hyung Jeon; Andrey G Cherstvy; Eli Barkai
Journal:  Phys Chem Chem Phys       Date:  2014-11-28       Impact factor: 3.676

10.  Loss of lamin A function increases chromatin dynamics in the nuclear interior.

Authors:  I Bronshtein; E Kepten; I Kanter; S Berezin; M Lindner; Abena B Redwood; S Mai; S Gonzalo; R Foisner; Y Shav-Tal; Y Garini
Journal:  Nat Commun       Date:  2015-08-24       Impact factor: 14.919

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