Literature DB >> 19564620

Ultrasonication-dependent production and breakdown lead to minimum-sized amyloid fibrils.

Eri Chatani1, Young-Ho Lee, Hisashi Yagi, Yuichi Yoshimura, Hironobu Naiki, Yuji Goto.   

Abstract

Because of the insolubility and polymeric properties of amyloid fibrils, techniques used conventionally to analyze protein structure and dynamics have often been hampered. Ultrasonication can induce the monomeric solution of amyloidogenic proteins to form amyloid fibrils. However, ultrasonication can break down preformed fibrils into shorter fibrils. Here, combining these 2 opposing effects on beta(2)-microglobulin (beta2-m), a protein responsible for dialysis-related amyloidosis, we present that ultrasonication pulses are useful for preparing monodispersed amyloid fibrils of minimal size with an average molecular weight of approximately 1,660,000 (140-mer). The production of minimal and monodispersed fibrils is achieved by the free energy minimum under competition between fibril production and breakdown. The small homogeneous fibrils will be of use for characterizing the structure and dynamics of amyloid fibrils, advancing molecular understanding of amyloidosis.

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Year:  2009        PMID: 19564620      PMCID: PMC2708754          DOI: 10.1073/pnas.0901422106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Structure of the cross-beta spine of amyloid-like fibrils.

Authors:  Rebecca Nelson; Michael R Sawaya; Melinda Balbirnie; Anders Ø Madsen; Christian Riekel; Robert Grothe; David Eisenberg
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

2.  Molecular recycling within amyloid fibrils.

Authors:  Natàlia Carulla; Gemma L Caddy; Damien R Hall; Jesús Zurdo; Margarida Gairí; Miguel Feliz; Ernest Giralt; Carol V Robinson; Christopher M Dobson
Journal:  Nature       Date:  2005-07-28       Impact factor: 49.962

3.  Ultrasonication-induced amyloid fibril formation of beta2-microglobulin.

Authors:  Yumiko Ohhashi; Miho Kihara; Hironobu Naiki; Yuji Goto
Journal:  J Biol Chem       Date:  2005-07-25       Impact factor: 5.157

4.  The physical basis of how prion conformations determine strain phenotypes.

Authors:  Motomasa Tanaka; Sean R Collins; Brandon H Toyama; Jonathan S Weissman
Journal:  Nature       Date:  2006-06-28       Impact factor: 49.962

Review 5.  Protein misfolding, functional amyloid, and human disease.

Authors:  Fabrizio Chiti; Christopher M Dobson
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

6.  Sedimentation velocity analysis of amyloid oligomers and fibrils.

Authors:  Yee-Foong Mok; Geoffrey J Howlett
Journal:  Methods Enzymol       Date:  2006       Impact factor: 1.600

7.  Characterization of the nanoscale properties of individual amyloid fibrils.

Authors:  Jeffrey F Smith; Tuomas P J Knowles; Christopher M Dobson; Cait E Macphee; Mark E Welland
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-12       Impact factor: 11.205

8.  Determination of molecular parameters by fitting sedimentation data to finite-element solutions of the Lamm equation.

Authors:  B Demeler; H Saber
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

9.  A new form of amyloid protein associated with chronic hemodialysis was identified as beta 2-microglobulin.

Authors:  F Gejyo; T Yamada; S Odani; Y Nakagawa; M Arakawa; T Kunitomo; H Kataoka; M Suzuki; Y Hirasawa; T Shirahama
Journal:  Biochem Biophys Res Commun       Date:  1985-06-28       Impact factor: 3.575

10.  Critical balance of electrostatic and hydrophobic interactions is required for beta 2-microglobulin amyloid fibril growth and stability.

Authors:  Bakthisaran Raman; Eri Chatani; Miho Kihara; Tadato Ban; Miyo Sakai; Kazuhiro Hasegawa; Hironobu Naiki; Ch Mohan Rao; Yuji Goto
Journal:  Biochemistry       Date:  2005-02-01       Impact factor: 3.162

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  32 in total

1.  Proper calibration of ultrasonic power enabled the quantitative analysis of the ultrasonication-induced amyloid formation process.

Authors:  Kei-ichi Yamaguchi; Tomoharu Matsumoto; Kazuo Kuwata
Journal:  Protein Sci       Date:  2011-11-22       Impact factor: 6.725

2.  Isolating toxic insulin amyloid reactive species that lack β-sheets and have wide pH stability.

Authors:  Caryn L Heldt; Dmitry Kurouski; Mirco Sorci; Elizabeth Grafeld; Igor K Lednev; Georges Belfort
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

3.  Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Hisashi Yagi; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

4.  Supersaturation-limited amyloid fibrillation of insulin revealed by ultrasonication.

Authors:  Hiroya Muta; Young-Ho Lee; József Kardos; Yuxi Lin; Hisashi Yagi; Yuji Goto
Journal:  J Biol Chem       Date:  2014-05-20       Impact factor: 5.157

5.  Hexafluoroisopropanol induces amyloid fibrils of islet amyloid polypeptide by enhancing both hydrophobic and electrostatic interactions.

Authors:  Kotaro Yanagi; Mizue Ashizaki; Hisashi Yagi; Kazumasa Sakurai; Young-Ho Lee; Yuji Goto
Journal:  J Biol Chem       Date:  2011-05-12       Impact factor: 5.157

6.  A residue-specific shift in stability and amyloidogenicity of antibody variable domains.

Authors:  Cardine N Nokwe; Martin Zacharias; Hisashi Yagi; Manuel Hora; Bernd Reif; Yuji Goto; Johannes Buchner
Journal:  J Biol Chem       Date:  2014-08-05       Impact factor: 5.157

7.  Heterogeneity in α-synuclein fibril activity correlates to disease phenotypes in Lewy body dementia.

Authors:  Arpine Sokratian; Julia Ziaee; Kaela Kelly; Allison Chang; Nicole Bryant; Shijie Wang; Enquan Xu; Joshua Y Li; Shih-Hsiu Wang; John Ervin; Sandip M Swain; Rodger A Liddle; Andrew B West
Journal:  Acta Neuropathol       Date:  2021-02-28       Impact factor: 17.088

8.  Nonequilibrium all-atom molecular dynamics simulation of the bubble cavitation and application to dissociate amyloid fibrils.

Authors:  Man Hoang Viet; Philippe Derreumaux; Phuong H Nguyen
Journal:  J Chem Phys       Date:  2016-11-07       Impact factor: 3.488

9.  Small liposomes accelerate the fibrillation of amyloid β (1-40).

Authors:  Mayu S Terakawa; Hisashi Yagi; Masayuki Adachi; Young-Ho Lee; Yuji Goto
Journal:  J Biol Chem       Date:  2014-11-18       Impact factor: 5.157

10.  Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation.

Authors:  Yuichi Yoshimura; Yuxi Lin; Hisashi Yagi; Young-Ho Lee; Hiroki Kitayama; Kazumasa Sakurai; Masatomo So; Hirotsugu Ogi; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

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