Literature DB >> 22908252

Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation.

Yuichi Yoshimura1, Yuxi Lin, Hisashi Yagi, Young-Ho Lee, Hiroki Kitayama, Kazumasa Sakurai, Masatomo So, Hirotsugu Ogi, Hironobu Naiki, Yuji Goto.   

Abstract

Amyloid fibrils and amorphous aggregates are two types of aberrant aggregates associated with protein misfolding diseases. Although they differ in morphology, the two forms are often treated indiscriminately. β(2)-microglobulin (β2m), a protein responsible for dialysis-related amyloidosis, forms amyloid fibrils or amorphous aggregates depending on the NaCl concentration at pH 2.5. We compared the kinetics of their formation, which was monitored by measuring thioflavin T fluorescence, light scattering, and 8-anilino-1-naphthalenesulfonate fluorescence. Thioflavin T fluorescence specifically monitors amyloid fibrillation, whereas light scattering and 8-anilino-1-naphthalenesulfonate fluorescence monitor both amyloid fibrillation and amorphous aggregation. The amyloid fibrils formed via a nucleation-dependent mechanism in a supersaturated solution, analogous to crystallization. The lag phase of fibrillation was reduced upon agitation with stirring or ultrasonic irradiation, and disappeared by seeding with preformed fibrils. In contrast, the glass-like amorphous aggregates formed rapidly without a lag phase. Neither agitation nor seeding accelerated the amorphous aggregation. Thus, by monitoring the kinetics, we can distinguish between crystal-like amyloid fibrils and glass-like amorphous aggregates. Solubility and supersaturation will be key factors for further understanding the aberrant aggregation of proteins.

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Year:  2012        PMID: 22908252      PMCID: PMC3437889          DOI: 10.1073/pnas.1208228109

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  Partially folded intermediates as critical precursors of light chain amyloid fibrils and amorphous aggregates.

Authors:  R Khurana; J R Gillespie; A Talapatra; L J Minert; C Ionescu-Zanetti; I Millett; A L Fink
Journal:  Biochemistry       Date:  2001-03-27       Impact factor: 3.162

2.  Exploring protein aggregation and self-propagation using lattice models: phase diagram and kinetics.

Authors:  R I Dima; D Thirumalai
Journal:  Protein Sci       Date:  2002-05       Impact factor: 6.725

Review 3.  Seeds to crystals.

Authors:  Terese Bergfors
Journal:  J Struct Biol       Date:  2003-04       Impact factor: 2.867

4.  Effect of environmental factors on the kinetics of insulin fibril formation: elucidation of the molecular mechanism.

Authors:  L Nielsen; R Khurana; A Coats; S Frokjaer; J Brange; S Vyas; V N Uversky; A L Fink
Journal:  Biochemistry       Date:  2001-05-22       Impact factor: 3.162

Review 5.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

6.  Sonication of proteins causes formation of aggregates that resemble amyloid.

Authors:  Peter B Stathopulos; Guenter A Scholz; Young-Mi Hwang; Jessica A O Rumfeldt; James R Lepock; Elizabeth M Meiering
Journal:  Protein Sci       Date:  2004-09-30       Impact factor: 6.725

7.  Sequence-based prediction of protein solubility.

Authors:  Federico Agostini; Michele Vendruscolo; Gian Gaetano Tartaglia
Journal:  J Mol Biol       Date:  2011-12-09       Impact factor: 5.469

8.  Acid-induced folding of proteins.

Authors:  Y Goto; L J Calciano; A L Fink
Journal:  Proc Natl Acad Sci U S A       Date:  1990-01       Impact factor: 11.205

9.  Partially unfolded states of beta(2)-microglobulin and amyloid formation in vitro.

Authors:  V J McParland; N M Kad; A P Kalverda; A Brown; P Kirwin-Jones; M G Hunter; M Sunde; S E Radford
Journal:  Biochemistry       Date:  2000-08-01       Impact factor: 3.162

10.  Fluorometric determination of amyloid fibrils in vitro using the fluorescent dye, thioflavin T1.

Authors:  H Naiki; K Higuchi; M Hosokawa; T Takeda
Journal:  Anal Biochem       Date:  1989-03       Impact factor: 3.365

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  79 in total

1.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

2.  What Can the Kinetics of Amyloid Fibril Formation Tell about Off-pathway Aggregation?

Authors:  Rosa Crespo; Eva Villar-Alvarez; Pablo Taboada; Fernando A Rocha; Ana M Damas; Pedro M Martins
Journal:  J Biol Chem       Date:  2015-11-24       Impact factor: 5.157

3.  Amyloid fibril formation in vitro from halophilic metal binding protein: its high solubility and reversibility minimized formation of amorphous protein aggregations.

Authors:  Yuhei Tokunaga; Mitsuharu Matsumoto; Masao Tokunaga; Tsutomu Arakawa; Yasushi Sugimoto
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

Review 4.  Impact of membrane curvature on amyloid aggregation.

Authors:  Mayu S Terakawa; Yuxi Lin; Misaki Kinoshita; Shingo Kanemura; Dai Itoh; Toshihiko Sugiki; Masaki Okumura; Ayyalusamy Ramamoorthy; Young-Ho Lee
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-04-28       Impact factor: 3.747

5.  A multi-pathway perspective on protein aggregation: implications for control of the rate and extent of amyloid formation.

Authors:  Damien Hall; József Kardos; Herman Edskes; John A Carver; Yuji Goto
Journal:  FEBS Lett       Date:  2015-01-31       Impact factor: 4.124

6.  Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Hisashi Yagi; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

7.  Stepwise organization of the β-structure identifies key regions essential for the propagation and cytotoxicity of insulin amyloid fibrils.

Authors:  Eri Chatani; Hiroshi Imamura; Naoki Yamamoto; Minoru Kato
Journal:  J Biol Chem       Date:  2014-02-25       Impact factor: 5.157

8.  MOAG-4 promotes the aggregation of α-synuclein by competing with self-protective electrostatic interactions.

Authors:  Yuichi Yoshimura; Mats A Holmberg; Predrag Kukic; Camilla B Andersen; Alejandro Mata-Cabana; S Fabio Falsone; Michele Vendruscolo; Ellen A A Nollen; Frans A A Mulder
Journal:  J Biol Chem       Date:  2017-03-23       Impact factor: 5.157

9.  Aggregation-phase diagrams of β2-microglobulin reveal temperature and salt effects on competitive formation of amyloids versus amorphous aggregates.

Authors:  Masayuki Adachi; Masahiro Noji; Masatomo So; Kenji Sasahara; József Kardos; Hironobu Naiki; Yuji Goto
Journal:  J Biol Chem       Date:  2018-08-03       Impact factor: 5.157

Review 10.  Lessons learned from protein aggregation: toward technological and biomedical applications.

Authors:  César L Avila; Silvina Chaves; Sergio B Socias; Esteban Vera-Pingitore; Florencia González-Lizárraga; Cecilia Vera; Diego Ploper; Rosana Chehín
Journal:  Biophys Rev       Date:  2017-09-13
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