Literature DB >> 19562044

Random Effects Models in a Meta-Analysis of the Accuracy of Two Diagnostic Tests Without a Gold Standard.

Haitao Chu1, Sining Chen, Thomas A Louis.   

Abstract

In studies of the accuracy of diagnostic tests, it is common that both the diagnostic test itself and the reference test are imperfect. This is the case for the microsatellite instability test, which is routinely used as a prescreening procedure to identify individuals with Lynch syndrome, the most common hereditary colorectal cancer syndrome. The microsatellite instability test is known to have imperfect sensitivity and specificity. Meanwhile, the reference test, mutation analysis, is also imperfect. We evaluate this test via a random effects meta-analysis of 17 studies. Study-specific random effects account for between-study heterogeneity in mutation prevalence, test sensitivities and specificities under a nonlinear mixed effects model and a Bayesian hierarchical model. Using model selection techniques, we explore a range of random effects models to identify a best-fitting model. We also evaluate sensitivity to the conditional independence assumption between the microsatellite instability test and the mutation analysis by allowing for correlation between them. Finally, we use simulations to illustrate the importance of including appropriate random effects and the impact of overfitting, underfitting, and misfitting on model performance. Our approach can be used to estimate the accuracy of two imperfect diagnostic tests from a meta-analysis of multiple studies or a multicenter study when the prevalence of disease, test sensitivities and/or specificities may be heterogeneous among studies or centers.

Entities:  

Year:  2009        PMID: 19562044      PMCID: PMC2701906          DOI: 10.1198/jasa.2009.0017

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  29 in total

1.  Bayesian approaches to modeling the conditional dependence between multiple diagnostic tests.

Authors:  N Dendukuri; L Joseph
Journal:  Biometrics       Date:  2001-03       Impact factor: 2.571

2.  Screening without a "gold standard": the Hui-Walter paradigm revisited.

Authors:  W O Johnson; J L Gastwirth; L M Pearson
Journal:  Am J Epidemiol       Date:  2001-05-01       Impact factor: 4.897

3.  Testing the independence of two diagnostic tests.

Authors:  Y Shen; D Wu; M Zelen
Journal:  Biometrics       Date:  2001-12       Impact factor: 2.571

4.  A cautionary note on the robustness of latent class models for estimating diagnostic error without a gold standard.

Authors:  Paul S Albert; Lori E Dodd
Journal:  Biometrics       Date:  2004-06       Impact factor: 2.571

5.  Effective communication of standard errors and confidence intervals.

Authors:  Thomas A Louis; Scott L Zeger
Journal:  Biostatistics       Date:  2008-06-10       Impact factor: 5.899

6.  On Estimating Diagnostic Accuracy From Studies With Multiple Raters and Partial Gold Standard Evaluation.

Authors:  Paul S Albert; Lori E Dodd
Journal:  J Am Stat Assoc       Date:  2008-03-01       Impact factor: 5.033

7.  Effects of dependent errors in the assessment of diagnostic test performance.

Authors:  V L Torrance-Rynard; S D Walter
Journal:  Stat Med       Date:  1997-10-15       Impact factor: 2.373

8.  Random effects models in latent class analysis for evaluating accuracy of diagnostic tests.

Authors:  Y Qu; M Tan; M H Kutner
Journal:  Biometrics       Date:  1996-09       Impact factor: 2.571

Review 9.  A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer.

Authors:  C R Boland; S N Thibodeau; S R Hamilton; D Sidransky; J R Eshleman; R W Burt; S J Meltzer; M A Rodriguez-Bigas; R Fodde; G N Ranzani; S Srivastava
Journal:  Cancer Res       Date:  1998-11-15       Impact factor: 12.701

10.  Revised Bethesda Guidelines for hereditary nonpolyposis colorectal cancer (Lynch syndrome) and microsatellite instability.

Authors:  Asad Umar; C Richard Boland; Jonathan P Terdiman; Sapna Syngal; Albert de la Chapelle; Josef Rüschoff; Richard Fishel; Noralane M Lindor; Lawrence J Burgart; Richard Hamelin; Stanley R Hamilton; Robert A Hiatt; Jeremy Jass; Annika Lindblom; Henry T Lynch; Païvi Peltomaki; Scott D Ramsey; Miguel A Rodriguez-Bigas; Hans F A Vasen; Ernest T Hawk; J Carl Barrett; Andrew N Freedman; Sudhir Srivastava
Journal:  J Natl Cancer Inst       Date:  2004-02-18       Impact factor: 13.506

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  33 in total

1.  Missing data in clinical studies: issues and methods.

Authors:  Joseph G Ibrahim; Haitao Chu; Ming-Hui Chen
Journal:  J Clin Oncol       Date:  2012-05-29       Impact factor: 44.544

2.  Meta-analysis of studies with bivariate binary outcomes: a marginal beta-binomial model approach.

Authors:  Yong Chen; Chuan Hong; Yang Ning; Xiao Su
Journal:  Stat Med       Date:  2015-08-24       Impact factor: 2.373

3.  Bayesian meta-analysis of the accuracy of a test for tuberculous pleuritis in the absence of a gold standard reference.

Authors:  Nandini Dendukuri; Ian Schiller; Lawrence Joseph; Madhukar Pai
Journal:  Biometrics       Date:  2012-05-08       Impact factor: 2.571

Review 4.  Lateral flow urine lipoarabinomannan assay for detecting active tuberculosis in HIV-positive adults.

Authors:  Maunank Shah; Colleen Hanrahan; Zhuo Yu Wang; Nandini Dendukuri; Stephen D Lawn; Claudia M Denkinger; Karen R Steingart
Journal:  Cochrane Database Syst Rev       Date:  2016-05-10

5.  A Bayesian hierarchical model for network meta-analysis of multiple diagnostic tests.

Authors:  Xiaoye Ma; Qinshu Lian; Haitao Chu; Joseph G Ibrahim; Yong Chen
Journal:  Biostatistics       Date:  2018-01-01       Impact factor: 5.899

6.  Classifying Injuries in Young Children as Abusive or Accidental: Reliability and Accuracy of an Expert Panel Approach.

Authors:  Douglas J Lorenz; Mary Clyde Pierce; Kim Kaczor; Rachel P Berger; Gina Bertocci; Bruce E Herman; Sandra Herr; Kent P Hymel; Carole Jenny; John M Leventhal; Karen Sheehan; Noel Zuckerbraun
Journal:  J Pediatr       Date:  2018-03-15       Impact factor: 4.406

7.  Bivariate random effects meta-analysis of diagnostic studies using generalized linear mixed models.

Authors:  Haitao Chu; Hongfei Guo; Yijie Zhou
Journal:  Med Decis Making       Date:  2009-12-03       Impact factor: 2.583

Review 8.  Xpert® MTB/RIF assay for extrapulmonary tuberculosis and rifampicin resistance.

Authors:  Mikashmi Kohli; Ian Schiller; Nandini Dendukuri; Keertan Dheda; Claudia M Denkinger; Samuel G Schumacher; Karen R Steingart
Journal:  Cochrane Database Syst Rev       Date:  2018-08-27

Review 9.  Summary diagnostic validity of commonly used maternal major depression disorder case finding instruments in the United States: A meta-analysis.

Authors:  Arthur H Owora; Hélène Carabin; Jessica Reese; Tabitha Garwe
Journal:  J Affect Disord       Date:  2016-08-16       Impact factor: 4.839

Review 10.  Xpert® MTB/RIF assay for pulmonary tuberculosis and rifampicin resistance in adults.

Authors:  Karen R Steingart; Hojoon Sohn; Ian Schiller; Lorie A Kloda; Catharina C Boehme; Madhukar Pai; Nandini Dendukuri
Journal:  Cochrane Database Syst Rev       Date:  2013-01-31
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