Literature DB >> 19561086

The small terminase, gp16, of bacteriophage T4 is a regulator of the DNA packaging motor.

Abdulrahman S Al-Zahrani1, Kiran Kondabagil, Song Gao, Noreen Kelly, Manjira Ghosh-Kumar, Venigalla B Rao.   

Abstract

Tailed bacteriophages and herpes viruses use powerful molecular motors to translocate DNA into a preassembled prohead and compact the DNA to near crystalline density. The phage T4 motor, a pentamer of 70-kDa large terminase, gp17, is the fastest and most powerful motor reported to date. gp17 has an ATPase activity that powers DNA translocation and a nuclease activity that cuts concatemeric DNA and generates the termini of viral genome. An 18-kDa small terminase, gp16, is also essential, but its role in DNA packaging is poorly understood. gp16 forms oligomers, most likely octamers, exhibits no enzymatic activities, but stimulates the gp17-ATPase activity, and inhibits the nuclease activity. Extensive mutational and biochemical analyses show that gp16 contains three domains, a central oligomerization domain, and N- and C-terminal domains that are essential for ATPase stimulation. Stimulation occurs not by nucleotide exchange or enhanced ATP binding but by triggering hydrolysis of gp17-bound ATP, a mechanism reminiscent of GTPase-activating proteins. gp16 does not have an arginine finger but its interaction with gp17 seems to position a gp17 arginine finger into the catalytic pocket. gp16 inhibits DNA translocation when gp17 is associated with the prohead. gp16 restricts gp17-nuclease such that the putative packaging initiation cut is made but random cutting is inhibited. These results suggest that the phage T4 packaging machine consists of a motor (gp17) and a regulator (gp16). The gp16 regulator is essential to coordinate the gp17 motor ATPase, translocase, and nuclease activities, otherwise it could be suicidal to the virus.

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Year:  2009        PMID: 19561086      PMCID: PMC2782041          DOI: 10.1074/jbc.M109.025007

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  52 in total

1.  Structure of the bacteriophage phi29 DNA packaging motor.

Authors:  A A Simpson; Y Tao; P G Leiman; M O Badasso; Y He; P J Jardine; N H Olson; M C Morais; S Grimes; D L Anderson; T S Baker; M G Rossmann
Journal:  Nature       Date:  2000-12-07       Impact factor: 49.962

2.  Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis.

Authors:  R I Menz; J E Walker; A G Leslie
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

3.  The structure of the ATPase that powers DNA packaging into bacteriophage T4 procapsids.

Authors:  Siyang Sun; Kiran Kondabagil; Petra M Gentz; Michael G Rossmann; Venigalla B Rao
Journal:  Mol Cell       Date:  2007-03-23       Impact factor: 17.970

4.  Monitoring the GAP catalyzed H-Ras GTPase reaction at atomic resolution in real time.

Authors:  C Allin; M R Ahmadian; A Wittinghofer; K Gerwert
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-03       Impact factor: 11.205

5.  Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK.

Authors:  C J Harrison; M Hayer-Hartl; M Di Liberto; F Hartl; J Kuriyan
Journal:  Science       Date:  1997-04-18       Impact factor: 47.728

6.  The DNA translocating ATPase of bacteriophage T4 packaging motor.

Authors:  Kiran R Kondabagil; Zhihong Zhang; Venigalla B Rao
Journal:  J Mol Biol       Date:  2006-08-25       Impact factor: 5.469

7.  The headful packaging nuclease of bacteriophage T4.

Authors:  Tanfis I Alam; Bonnie Draper; Kiran Kondabagil; Francisco J Rentas; Manjira Ghosh-Kumar; Siyang Sun; Michael G Rossmann; Venigalla B Rao
Journal:  Mol Microbiol       Date:  2008-07-04       Impact factor: 3.501

8.  The functional domains of bacteriophage t4 terminase.

Authors:  Shuji Kanamaru; Kiran Kondabagil; Michael G Rossmann; Venigalla B Rao
Journal:  J Biol Chem       Date:  2004-07-19       Impact factor: 5.157

9.  Prediction and functional analysis of native disorder in proteins from the three kingdoms of life.

Authors:  J J Ward; J S Sodhi; L J McGuffin; B F Buxton; D T Jones
Journal:  J Mol Biol       Date:  2004-03-26       Impact factor: 5.469

10.  Mutations affecting the high affinity ATPase center of gpA, the large subunit of bacteriophage lambda terminase, inactivate the endonuclease activity of terminase.

Authors:  Y Hwang; M Feiss
Journal:  J Mol Biol       Date:  1996-08-30       Impact factor: 5.469

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  28 in total

1.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

2.  Specificity of interactions among the DNA-packaging machine components of T4-related bacteriophages.

Authors:  Song Gao; Venigalla B Rao
Journal:  J Biol Chem       Date:  2010-12-02       Impact factor: 5.157

3.  Structural basis for DNA recognition and loading into a viral packaging motor.

Authors:  Carina R Büttner; Maria Chechik; Miguel Ortiz-Lombardía; Callum Smits; Ima-Obong Ebong; Victor Chechik; Gunnar Jeschke; Eric Dykeman; Stefano Benini; Carol V Robinson; Juan C Alonso; Alfred A Antson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

Review 4.  The DNA-packaging nanomotor of tailed bacteriophages.

Authors:  Sherwood R Casjens
Journal:  Nat Rev Microbiol       Date:  2011-08-12       Impact factor: 60.633

Review 5.  Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Authors:  Lindsay W Black; Venigalla B Rao
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

6.  Portal-large terminase interactions of the bacteriophage T4 DNA packaging machine implicate a molecular lever mechanism for coupling ATPase to DNA translocation.

Authors:  Shylaja Hegde; Victor Padilla-Sanchez; Bonnie Draper; Venigalla B Rao
Journal:  J Virol       Date:  2012-02-15       Impact factor: 5.103

7.  A thermophilic phage uses a small terminase protein with a fixed helix-turn-helix geometry.

Authors:  Janelle A Hayes; Brendan J Hilbert; Christl Gaubitz; Nicholas P Stone; Brian A Kelch
Journal:  J Biol Chem       Date:  2020-02-03       Impact factor: 5.157

8.  The dynamic pause-unpackaging state, an off-translocation recovery state of a DNA packaging motor from bacteriophage T4.

Authors:  Vishal I Kottadiel; Venigalla B Rao; Yann R Chemla
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

9.  Real-time sensing and discrimination of single chemicals using the channel of phi29 DNA packaging nanomotor.

Authors:  Farzin Haque; Jennifer Lunn; Huaming Fang; David Smithrud; Peixuan Guo
Journal:  ACS Nano       Date:  2012-04-09       Impact factor: 15.881

10.  Designing a nine cysteine-less DNA packaging motor from bacteriophage T4 reveals new insights into ATPase structure and function.

Authors:  Kiran Kondabagil; Li Dai; Reza Vafabakhsh; Taekjip Ha; Bonnie Draper; Venigalla B Rao
Journal:  Virology       Date:  2014-10-16       Impact factor: 3.616

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