Literature DB >> 15265872

The functional domains of bacteriophage t4 terminase.

Shuji Kanamaru1, Kiran Kondabagil, Michael G Rossmann, Venigalla B Rao.   

Abstract

The packaging of double-stranded genomic DNA into some viral and all bacteriophage capsids is driven by powerful molecular motors. In bacteriophage T4, the motor consists of the portal protein assembly composed of twelve copies of gene product 20 (gp20, 61 kDa) and an oligomeric terminase complex composed of gp16 (18 kDa) and gp17 (70 kDa). The packaging motor drives the 171-kbp T4 DNA into the capsid utilizing the free energy of ATP hydrolysis. Evidence suggests that gp17 is the key component of the motor; it exhibits ATPase, nuclease, and in vitro DNA-packaging activities. The N- and C-terminal halves of gp17 were expressed and purified to homogeneity and found to have ATPase and nuclease activities, respectively. The N-terminal domain exhibited 2-3-fold higher Kcat values for gp16-stimulated ATPase than the full-length gp17. Neither of the domains, individually or together, exhibited in vitro DNA-packaging activity, suggesting that communication between the domains is essential for DNA packaging. The domains, in particular the C-terminal domain or a mixture of both the N- and C-terminal domains, inhibited in vitro DNA packaging that is catalyzed by full-length gp17. In conjunction with genetic evidence, these data suggest that the domains compete with the full-length gp17 for binding sites on the portal protein. A model for the assembly of the T4 DNA-packaging machine is presented. Copyright 2004 American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2004        PMID: 15265872     DOI: 10.1074/jbc.M403647200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

1.  Structure and function of the small terminase component of the DNA packaging machine in T4-like bacteriophages.

Authors:  Siyang Sun; Song Gao; Kiran Kondabagil; Ye Xiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-29       Impact factor: 11.205

2.  Structure of p22 headful packaging nuclease.

Authors:  Ankoor Roy; Gino Cingolani
Journal:  J Biol Chem       Date:  2012-06-19       Impact factor: 5.157

3.  Specificity of interactions among the DNA-packaging machine components of T4-related bacteriophages.

Authors:  Song Gao; Venigalla B Rao
Journal:  J Biol Chem       Date:  2010-12-02       Impact factor: 5.157

4.  Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Authors:  Ankoor Roy; Anshul Bhardwaj; Pinaki Datta; Gabriel C Lander; Gino Cingolani
Journal:  Structure       Date:  2012-07-05       Impact factor: 5.006

5.  The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Rui-Gang Xu; Brian A Kelch
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

Review 6.  Old, new, and widely true: The bacteriophage T4 DNA packaging mechanism.

Authors:  Lindsay W Black
Journal:  Virology       Date:  2015-02-27       Impact factor: 3.616

7.  Herpes simplex virus capsid structure: DNA packaging protein UL25 is located on the external surface of the capsid near the vertices.

Authors:  William W Newcomb; Fred L Homa; Jay C Brown
Journal:  J Virol       Date:  2006-07       Impact factor: 5.103

8.  Characterization of the role of very late expression factor 1 in baculovirus capsid structure and DNA processing.

Authors:  Adam L Vanarsdall; Kazuhiro Okano; George F Rohrmann
Journal:  J Virol       Date:  2006-02       Impact factor: 5.103

9.  Capsid size determination by Staphylococcus aureus pathogenicity island SaPI1 involves specific incorporation of SaPI1 proteins into procapsids.

Authors:  Anton Poliakov; Jenny R Chang; Michael S Spilman; Priyadarshan K Damle; Gail E Christie; James A Mobley; Terje Dokland
Journal:  J Mol Biol       Date:  2008-05-03       Impact factor: 5.469

Review 10.  Mechanisms of DNA Packaging by Large Double-Stranded DNA Viruses.

Authors:  Venigalla B Rao; Michael Feiss
Journal:  Annu Rev Virol       Date:  2015-09-10       Impact factor: 10.431

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