Literature DB >> 16799124

Advancing biomedical image retrieval: development and analysis of a test collection.

William R Hersh1, Henning Müller, Jeffery R Jensen, Jianji Yang, Paul N Gorman, Patrick Ruch.   

Abstract

OBJECTIVE: Develop and analyze results from an image retrieval test collection.
METHODS: After participating research groups obtained and assessed results from their systems in the image retrieval task of Cross-Language Evaluation Forum, we assessed the results for common themes and trends. In addition to overall performance, results were analyzed on the basis of topic categories (those most amenable to visual, textual, or mixed approaches) and run categories (those employing queries entered by automated or manual means as well as those using visual, textual, or mixed indexing and retrieval methods). We also assessed results on the different topics and compared the impact of duplicate relevance judgments.
RESULTS: A total of 13 research groups participated. Analysis was limited to the best run submitted by each group in each run category. The best results were obtained by systems that combined visual and textual methods. There was substantial variation in performance across topics. Systems employing textual methods were more resilient to visually oriented topics than those using visual methods were to textually oriented topics. The primary performance measure of mean average precision (MAP) was not necessarily associated with other measures, including those possibly more pertinent to real users, such as precision at 10 or 30 images.
CONCLUSIONS: We developed a test collection amenable to assessing visual and textual methods for image retrieval. Future work must focus on how varying topic and run types affect retrieval performance. Users' studies also are necessary to determine the best measures for evaluating the efficacy of image retrieval systems.

Mesh:

Year:  2006        PMID: 16799124      PMCID: PMC1561788          DOI: 10.1197/jamia.M2082

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  11 in total

1.  Towards content-based image retrieval in a HIS-integrated PACS.

Authors:  C Le Bozec; E Zapletal; M C Jaulent; D Heudes; P Degoulet
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2.  Group for research in pathology education online resources to facilitate pathology instruction.

Authors:  Kristopher N Jones; Regina Kreisle; Roger W Geiss; John H Holliman; Patsy H Lill; Peter G Anderson
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3.  [Web-based learning tools in pathology].

Authors:  K Glatz-Krieger; D Glatz; M Gysel; M Dittler; M J Mihatsch
Journal:  Pathologe       Date:  2003-04-12       Impact factor: 1.011

Review 4.  A review of content-based image retrieval systems in medical applications-clinical benefits and future directions.

Authors:  Henning Müller; Nicolas Michoux; David Bandon; Antoine Geissbuhler
Journal:  Int J Med Inform       Date:  2004-02       Impact factor: 4.046

5.  Casimage project: a digital teaching files authoring environment.

Authors:  Antoine Rosset; Henning Muller; Martina Martins; Natalia Dfouni; Jean-Paul Vallée; Osman Ratib
Journal:  J Thorac Imaging       Date:  2004-04       Impact factor: 3.000

6.  The findings--diagnosis continuum: implications for image descriptions and clinical databases.

Authors:  R A Greenes; R C McClure; E Pattison-Gordon; L Sato
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7.  Establishing an international reference image database for research and development in medical image processing.

Authors:  A Horsch; M Prinz; S Schneider; O Sipilä; K Spinnler; J-P Vallée; I Verdonck-de Leeuw; R Vogl; T Wittenberg; G Zahlmann
Journal:  Methods Inf Med       Date:  2004       Impact factor: 2.176

8.  Influences, usage, and outcomes of Internet health information searching: multivariate results from the Pew surveys.

Authors:  Ronald E Rice
Journal:  Int J Med Inform       Date:  2005-08-24       Impact factor: 4.046

9.  An Internet-based nuclear medicine teaching file.

Authors:  J W Wallis; M M Miller; T R Miller; T H Vreeland
Journal:  J Nucl Med       Date:  1995-08       Impact factor: 10.057

10.  Enhancing access to the Bibliome: the TREC 2004 Genomics Track.

Authors:  William R Hersh; Ravi Teja Bhupatiraju; Laura Ross; Phoebe Roberts; Aaron M Cohen; Dale F Kraemer
Journal:  J Biomed Discov Collab       Date:  2006-03-13
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  10 in total

Review 1.  The ImageCLEFmed medical image retrieval task test collection.

Authors:  William Hersh; Henning Müller; Jayashree Kalpathy-Cramer
Journal:  J Digit Imaging       Date:  2008-09-03       Impact factor: 4.056

2.  Accurate determination of imaging modality using an ensemble of text- and image-based classifiers.

Authors:  Charles E Kahn; Jayashree Kalpathy-Cramer; Cesar A Lam; Christina E Eldredge
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

3.  Towards the creation of a visual ontology of biomedical imaging entities.

Authors:  Matthew S Simpson; Daekeun You; Md Mahmudur Rahman; Sameer K Antani; George R Thoma; Dina Demner-Fushman
Journal:  AMIA Annu Symp Proc       Date:  2012-11-03

4.  Effectiveness of Global Features for Automatic Medical Image Classification and Retrieval - the experiences of OHSU at ImageCLEFmed.

Authors:  Jayashree Kalpathy-Cramer; William Hersh
Journal:  Pattern Recognit Lett       Date:  2008-11-01       Impact factor: 3.756

5.  Natural Language Processing Versus Content-Based Image Analysis for Medical Document Retrieval.

Authors:  Aurélie Névéol; Thomas M Deserno; Stéfan J Darmoni; Mark Oliver Güld; Alan R Aronson
Journal:  J Am Soc Inf Sci Technol       Date:  2008-09-18

6.  Identifying patient smoking status from medical discharge records.

Authors:  Ozlem Uzuner; Ira Goldstein; Yuan Luo; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2007-10-18       Impact factor: 4.497

7.  Effective metadata discovery for dynamic filtering of queries to a radiology image search engine.

Authors:  Charles E Kahn
Journal:  J Digit Imaging       Date:  2007-06-09       Impact factor: 4.056

8.  Annotation and retrieval of clinically relevant images.

Authors:  Dina Demner-Fushman; Sameer Antani; Matthew Simpson; George R Thoma
Journal:  Int J Med Inform       Date:  2009-07-09       Impact factor: 4.046

9.  Biomedical imaging modality classification using combined visual features and textual terms.

Authors:  Xian-Hua Han; Yen-Wei Chen
Journal:  Int J Biomed Imaging       Date:  2011-09-08

10.  Towards case-based medical learning in radiological decision making using content-based image retrieval.

Authors:  Petra Welter; Thomas M Deserno; Benedikt Fischer; Rolf W Günther; Cord Spreckelsen
Journal:  BMC Med Inform Decis Mak       Date:  2011-10-27       Impact factor: 2.796

  10 in total

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