Literature DB >> 19521879

Bacterial genome sequencing.

Hervé Tettelin1, Tamara Feldblyum.   

Abstract

For over 30 yr, the Sanger method has been the standard for DNA sequencing. Instruments have been developed and improved over time to increase throughput, but they always relied on the same technology. Today, we are facing a revolution in DNA sequencing with many drastically different platforms that have become or will soon become available on the market. We review a number of sequencing technologies and provide examples of applications. We also discuss the impact genomics and new DNA sequencing approaches have had on various fields of biological research.

Mesh:

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Year:  2009        PMID: 19521879     DOI: 10.1007/978-1-60327-999-4_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

1.  Genome sequence of Pseudomonas putida Idaho, a unique organic-solvent-tolerant bacterium.

Authors:  Fei Tao; Hongzhi Tang; Zhonghui Gai; Fei Su; Xiaoyu Wang; Xiaofei He; Ping Xu
Journal:  J Bacteriol       Date:  2011-12       Impact factor: 3.490

2.  High-resolution typing by integration of genome sequencing data in a large tuberculosis cluster.

Authors:  Anita C Schürch; Kristin Kremer; Olaf Daviena; Albert Kiers; Martin J Boeree; Roland J Siezen; Dick van Soolingen
Journal:  J Clin Microbiol       Date:  2010-06-30       Impact factor: 5.948

Review 3.  The next-generation sequencing technology and application.

Authors:  Xiaoguang Zhou; Lufeng Ren; Qingshu Meng; Yuntao Li; Yude Yu; Jun Yu
Journal:  Protein Cell       Date:  2010-07-07       Impact factor: 14.870

4.  FINDSITE-metal: integrating evolutionary information and machine learning for structure-based metal-binding site prediction at the proteome level.

Authors:  Michal Brylinski; Jeffrey Skolnick
Journal:  Proteins       Date:  2010-12-06

Review 5.  Microbial genomics and infectious diseases.

Authors:  David A Relman
Journal:  N Engl J Med       Date:  2011-07-28       Impact factor: 91.245

6.  The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement.

Authors:  Michal Brylinski; Seung Yup Lee; Hongyi Zhou; Jeffrey Skolnick
Journal:  J Struct Biol       Date:  2010-09-17       Impact factor: 2.867

7.  Mutation detection with next-generation resequencing through a mediator genome.

Authors:  Omri Wurtzel; Mally Dori-Bachash; Shmuel Pietrokovski; Edouard Jurkevitch; Rotem Sorek
Journal:  PLoS One       Date:  2010-12-31       Impact factor: 3.240

8.  Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison.

Authors:  Alexander F Auch; Mathias von Jan; Hans-Peter Klenk; Markus Göker
Journal:  Stand Genomic Sci       Date:  2010-01-28

Review 9.  Complex natural product production methods and options.

Authors:  Dongwon Park; Girish Swayambhu; Thomas Lyga; Blaine A Pfeifer
Journal:  Synth Syst Biotechnol       Date:  2021-01-05

10.  Whole-genome resequencing of Escherichia coli K-12 MG1655 undergoing short-term laboratory evolution in lactate minimal media reveals flexible selection of adaptive mutations.

Authors:  Tom M Conrad; Andrew R Joyce; M Kenyon Applebee; Christian L Barrett; Bin Xie; Yuan Gao; Bernhard Ø Palsson
Journal:  Genome Biol       Date:  2009-10-22       Impact factor: 13.583

  10 in total

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