Literature DB >> 22123764

Genome sequence of Pseudomonas putida Idaho, a unique organic-solvent-tolerant bacterium.

Fei Tao1, Hongzhi Tang, Zhonghui Gai, Fei Su, Xiaoyu Wang, Xiaofei He, Ping Xu.   

Abstract

Pseudomonas putida Idaho is an organic-solvent-tolerant strain which can degrade and adapt to high concentrations of organic solvents. Here, we announce its first draft genome sequence (6,363,067 bp). We annotated 192 coding sequences (CDSs) responsible for aromatic compound metabolism, 40 CDSs encoding phospholipid synthesis, and 212 CDSs related to stress response.

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Year:  2011        PMID： 22123764      PMCID： PMC3232851          DOI： 10.1128/JB.06200-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  12 in total

Review 1.  Tolerance of bacteria to organic solvents.

Authors:  Yogita Sardessai; Saroj Bhosle
Journal:  Res Microbiol       Date:  2002-06       Impact factor: 3.992

Review 2.  Industrial potential of organic solvent tolerant bacteria.

Authors:  Yogita N Sardessai; Saroj Bhosle
Journal:  Biotechnol Prog       Date:  2004 May-Jun

Review 3.  Advanced sequencing technologies and their wider impact in microbiology.

Authors:  Neil Hall
Journal:  J Exp Biol       Date:  2007-05       Impact factor: 3.312

4.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

5.  Biodesulfurization in biphasic systems containing organic solvents.

Authors:  Fei Tao; Bo Yu; Ping Xu; Cui Qing Ma
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

6.  Novel organic solvent-responsive expression vectors for biocatalysis: application for development of an organic solvent-tolerant biodesulfurizing strain.

Authors:  Fei Tao; Yanhua Liu; Qian Luo; Fei Su; Youqiang Xu; Fuli Li; Bo Yu; Cuiqing Ma; Ping Xu
Journal:  Bioresour Technol       Date:  2011-08-10       Impact factor: 9.642

Review 7.  Mechanisms of solvent tolerance in gram-negative bacteria.

Authors:  Juan L Ramos; Estrella Duque; Maria-Trinidad Gallegos; Patricia Godoy; Maria Isabel Ramos-Gonzalez; Antonia Rojas; Wilson Teran; Ana Segura
Journal:  Annu Rev Microbiol       Date:  2002-01-30       Impact factor: 15.500

8.  Recombinant carbazole-degrading strains for enhanced petroleum processing.

Authors:  Robert R Riddle; Phillip R Gibbs; Richard C Willson; Michael J Benedik
Journal:  J Ind Microbiol Biotechnol       Date:  2003-01-03       Impact factor: 3.346

9.  Physiological properties of a Pseudomonas strain which grows with p-xylene in a two-phase (organic-aqueous) medium.

Authors:  D L Cruden; J H Wolfram; R D Rogers; D T Gibson
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
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  4 in total

1.  Response Mechanisms in Serratia marcescens IBBPo15 During Organic Solvents Exposure.

Authors:  Mihaela Marilena Stancu
Journal:  Curr Microbiol       Date:  2016-08-18       Impact factor: 2.188

2.  Genome sequence of Pseudomonas putida S12, a potential platform strain for industrial production of valuable chemicals.

Authors:  Fei Tao; Yaling Shen; Ziqi Fan; Hongzhi Tang; Ping Xu
Journal:  J Bacteriol       Date:  2012-11       Impact factor: 3.490

3.  Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.

Authors:  Lázaro Molina; Valérie A Geoffroy; Ana Segura; Zulema Udaondo; Juan-Luis Ramos
Journal:  Front Microbiol       Date:  2016-12-27       Impact factor: 5.640

4.  Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.

Authors:  Zulema Udaondo; Lazaro Molina; Craig Daniels; Manuel J Gómez; María A Molina-Henares; Miguel A Matilla; Amalia Roca; Matilde Fernández; Estrella Duque; Ana Segura; Juan Luis Ramos
Journal:  Microb Biotechnol       Date:  2013-07-01       Impact factor: 5.813
  4 in total

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