Literature DB >> 19505100

Thermal decay of rhodopsin: role of hydrogen bonds in thermal isomerization of 11-cis retinal in the binding site and hydrolysis of protonated Schiff base.

Jian Liu1, Monica Yun Liu, Jennifer B Nguyen, Aditi Bhagat, Victoria Mooney, Elsa C Y Yan.   

Abstract

Although thermal stability of the G protein-coupled receptor rhodopsin is directly related to its extremely low dark noise level and has recently generated considerable interest, the chemistry behind the thermal decay process of rhodopsin has remained unclear. Using UV-vis spectroscopy and HPLC analysis, we have demonstrated that the thermal decay of rhodopsin involves both hydrolysis of the protonated Schiff base and thermal isomerization of 11-cis to all-trans retinal. Examining the unfolding of rhodopsin by circular dichroism spectroscopy and measuring the rate of thermal isomerization of 11-cis retinal in solution, we conclude that the observed thermal isomerization of 11-cis to all-trans retinal happens when 11-cis retinal is in the binding pocket of rhodopsin. Furthermore, we demonstrate that solvent deuterium isotope effects are involved in the thermal decay process by decreasing the rates of thermal isomerization and hydrolysis, suggesting that the rate-determining step of these processes involves breaking hydrogen bonds. These results provide insight into understanding the critical role of an extensive hydrogen-bonding network on stabilizing the inactive state of rhodopsin and contribute to our current understanding of the low dark noise level of rhodopsin, which enables this specialized protein to function as an extremely sensitive biological light detector. Because similar hydrogen-bonding networks have also been suggested by structural analysis of two other GPCRs, beta1 and beta2 adrenergic receptors, our results could reveal a general role of hydrogen bonds in facilitating GPCR function.

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Year:  2009        PMID: 19505100      PMCID: PMC2918417          DOI: 10.1021/ja903154u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Specific isomerization of rhodopsin-bound 11-cis-retinal to all-trans-retinal under thermal denaturation.

Authors:  L J Del Valle; E Ramon; L Bosch; J Manyosa; P Garriga
Journal:  Cell Mol Life Sci       Date:  2003-11       Impact factor: 9.261

2.  Stability of dark state rhodopsin is mediated by a conserved ion pair in intradiscal loop E-2.

Authors:  Jay M Janz; Jonathan F Fay; David L Farrens
Journal:  J Biol Chem       Date:  2003-01-23       Impact factor: 5.157

3.  Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis.

Authors:  Jay M Janz; David L Farrens
Journal:  J Biol Chem       Date:  2004-10-08       Impact factor: 5.157

4.  Circular dichroism of visual pigments in the visible and ultraviolet spectral regions.

Authors:  F Crescitelli; W F Mommaerts; T I Shaw
Journal:  Proc Natl Acad Sci U S A       Date:  1966-12       Impact factor: 11.205

5.  Low retinal noise in animals with low body temperature allows high visual sensitivity.

Authors:  A C Aho; K Donner; C Hydén; L O Larsen; T Reuter
Journal:  Nature       Date:  1988-07-28       Impact factor: 49.962

6.  Two components of electrical dark noise in toad retinal rod outer segments.

Authors:  D A Baylor; G Matthews; K W Yau
Journal:  J Physiol       Date:  1980-12       Impact factor: 5.182

7.  Rhodopsin: structural basis of molecular physiology.

Authors:  S T Menon; M Han; T P Sakmar
Journal:  Physiol Rev       Date:  2001-10       Impact factor: 37.312

8.  Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin.

Authors:  Elsa C Y Yan; Manija A Kazmi; Ziad Ganim; Jian-Min Hou; Douhai Pan; Belinda S W Chang; Thomas P Sakmar; Richard A Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-30       Impact factor: 11.205

9.  The photocurrent, noise and spectral sensitivity of rods of the monkey Macaca fascicularis.

Authors:  D A Baylor; B J Nunn; J L Schnapf
Journal:  J Physiol       Date:  1984-12       Impact factor: 5.182

Review 10.  On the molecular origins of thermal noise in vertebrate and invertebrate photoreceptors.

Authors:  R R Birge; R B Barlow
Journal:  Biophys Chem       Date:  1995 Jun-Jul       Impact factor: 2.352

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  10 in total

1.  Biophotons Contribute to Retinal Dark Noise.

Authors:  Zehua Li; Jiapei Dai
Journal:  Neurosci Bull       Date:  2016-04-08       Impact factor: 5.203

Review 2.  Advances in understanding the molecular basis of the first steps in color vision.

Authors:  Lukas Hofmann; Krzysztof Palczewski
Journal:  Prog Retin Eye Res       Date:  2015-07-15       Impact factor: 21.198

3.  Thermal stability of rhodopsin and progression of retinitis pigmentosa: comparison of S186W and D190N rhodopsin mutants.

Authors:  Monica Yun Liu; Jian Liu; Devi Mehrotra; Yuting Liu; Ying Guo; Pedro A Baldera-Aguayo; Victoria L Mooney; Adel M Nour; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2013-04-26       Impact factor: 5.157

4.  Salt effects on the conformational stability of the visual G-protein-coupled receptor rhodopsin.

Authors:  Arfaxad Reyes-Alcaraz; Marlet Martínez-Archundia; Eva Ramon; Pere Garriga
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

5.  Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision.

Authors:  Ying Guo; Sivakumar Sekharan; Jian Liu; Victor S Batista; John C Tully; Elsa C Y Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

6.  Low-Temperature Trapping of Photointermediates of the Rhodopsin E181Q Mutant.

Authors:  Megan N Sandberg; Jordan A Greco; Nicole L Wagner; Tabitha L Amora; Lavoisier A Ramos; Min-Hsuan Chen; Barry E Knox; Robert R Birge
Journal:  SOJ Biochem       Date:  2014

7.  Chemical kinetic analysis of thermal decay of rhodopsin reveals unusual energetics of thermal isomerization and hydrolysis of Schiff base.

Authors:  Jian Liu; Monica Yun Liu; Li Fu; Gefei Alex Zhu; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2011-09-15       Impact factor: 5.157

8.  Thermal properties of rhodopsin: insight into the molecular mechanism of dim-light vision.

Authors:  Jian Liu; Monica Yun Liu; Jennifer B Nguyen; Aditi Bhagat; Victoria Mooney; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2011-06-09       Impact factor: 5.157

9.  Structural role of the T94I rhodopsin mutation in congenital stationary night blindness.

Authors:  Ankita Singhal; Ying Guo; Milos Matkovic; Gebhard Schertler; Xavier Deupi; Elsa Cy Yan; Joerg Standfuss
Journal:  EMBO Rep       Date:  2016-07-25       Impact factor: 8.807

10.  Retinal degeneration in mice expressing the constitutively active G90D rhodopsin mutant.

Authors:  Alejandro T Colozo; Sreelakshmi Vasudevan; Paul S-H Park
Journal:  Hum Mol Genet       Date:  2020-04-15       Impact factor: 6.150

  10 in total

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