Literature DB >> 25002518

Unusual kinetics of thermal decay of dim-light photoreceptors in vertebrate vision.

Ying Guo1, Sivakumar Sekharan1, Jian Liu1, Victor S Batista1, John C Tully2, Elsa C Y Yan2.   

Abstract

We present measurements of rate constants for thermal-induced reactions of the 11-cis retinyl chromophore in vertebrate visual pigment rhodopsin, a process that produces noise and limits the sensitivity of vision in dim light. At temperatures of 52.0-64.6 °C, the rate constants fit well to an Arrhenius straight line with, however, an unexpectedly large activation energy of 114 ± 8 kcal/mol, which is much larger than the 60-kcal/mol photoactivation energy at 500 nm. Moreover, we obtain an unprecedentedly large prefactor of 10(72±5) s(-1), which is roughly 60 orders of magnitude larger than typical frequencies of molecular motions! At lower temperatures, the measured Arrhenius parameters become more normal: Ea = 22 ± 2 kcal/mol and Apref = 10(9±1) s(-1) in the range of 37.0-44.5 °C. We present a theoretical framework and supporting calculations that attribute this unusual temperature-dependent kinetics of rhodopsin to a lowering of the reaction barrier at higher temperatures due to entropy-driven partial breakup of the rigid hydrogen-bonding network that hinders the reaction at lower temperatures.

Entities:  

Keywords:  dim-light vision; isomerization rate; non-Arrhenius; transition state theory

Mesh:

Substances:

Year:  2014        PMID: 25002518      PMCID: PMC4115513          DOI: 10.1073/pnas.1410826111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

Review 1.  Activation of rhodopsin: new insights from structural and biochemical studies.

Authors:  T Okada; O P Ernst; K Palczewski; K P Hofmann
Journal:  Trends Biochem Sci       Date:  2001-05       Impact factor: 13.807

2.  QM/MM study of energy storage and molecular rearrangements due to the primary event in vision.

Authors:  Jose A Gascon; Victor S Batista
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

3.  The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.

Authors:  Tetsuji Okada; Minoru Sugihara; Ana-Nicoleta Bondar; Marcus Elstner; Peter Entel; Volker Buss
Journal:  J Mol Biol       Date:  2004-09-10       Impact factor: 5.469

4.  Role of the retinal hydrogen bond network in rhodopsin Schiff base stability and hydrolysis.

Authors:  Jay M Janz; David L Farrens
Journal:  J Biol Chem       Date:  2004-10-08       Impact factor: 5.157

5.  1,2-diacyl-phosphatidylcholine flip-flop measured directly by sum-frequency vibrational spectroscopy.

Authors:  Jin Liu; John C Conboy
Journal:  Biophys J       Date:  2005-08-05       Impact factor: 4.033

6.  Energy uptake in the first step of visual excitation.

Authors:  A Cooper
Journal:  Nature       Date:  1979-11-29       Impact factor: 49.962

7.  Thermal properties of rhodopsin: insight into the molecular mechanism of dim-light vision.

Authors:  Jian Liu; Monica Yun Liu; Jennifer B Nguyen; Aditi Bhagat; Victoria Mooney; Elsa C Y Yan
Journal:  J Biol Chem       Date:  2011-06-09       Impact factor: 5.157

8.  The stereoisomerization of 11-cis-retinal.

Authors:  R Hubbard
Journal:  J Biol Chem       Date:  1966-04-25       Impact factor: 5.157

9.  QM/MM study of the structure, energy storage, and origin of the bathochromic shift in vertebrate and invertebrate bathorhodopsins.

Authors:  Sivakumar Sekharan; Keiji Morokuma
Journal:  J Am Chem Soc       Date:  2011-03-10       Impact factor: 15.419

10.  Isomerization of 11-cis-retinoids to all-trans-retinoids in vitro and in vivo.

Authors:  J K McBee; J P Van Hooser; G F Jang; K Palczewski
Journal:  J Biol Chem       Date:  2001-10-16       Impact factor: 5.157

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  8 in total

1.  Evolution of nonspectral rhodopsin function at high altitudes.

Authors:  Gianni M Castiglione; Frances E Hauser; Brian S Liao; Nathan K Lujan; Alexander Van Nynatten; James M Morrow; Ryan K Schott; Nihar Bhattacharyya; Sarah Z Dungan; Belinda S W Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-22       Impact factor: 11.205

2.  Action and Ion Mobility Spectroscopy of a Shortened Retinal Derivative.

Authors:  Lihi Musbat; Shirrel Assis; Jonathan M Dilger; Tarick J El-Baba; Daniel R Fuller; Jeppe Langeland Knudsen; Hjalte V Kiefer; Amiram Hirshfeld; Noga Friedman; Lars H Andersen; Mordechai Sheves; David E Clemmer; Yoni Toker
Journal:  J Am Soc Mass Spectrom       Date:  2018-07-30       Impact factor: 3.109

Review 3.  Advances in understanding the molecular basis of the first steps in color vision.

Authors:  Lukas Hofmann; Krzysztof Palczewski
Journal:  Prog Retin Eye Res       Date:  2015-07-15       Impact factor: 21.198

4.  Measurement of Slow Spontaneous Release of 11-cis-Retinal from Rhodopsin.

Authors:  He Tian; Thomas P Sakmar; Thomas Huber
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

5.  Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism.

Authors:  Sahil Gulati; Beata Jastrzebska; Surajit Banerjee; Ángel L Placeres; Przemyslaw Miszta; Songqi Gao; Karl Gunderson; Gregory P Tochtrop; Sławomir Filipek; Kota Katayama; Philip D Kiser; Muneto Mogi; Phoebe L Stewart; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

6.  Structural role of the T94I rhodopsin mutation in congenital stationary night blindness.

Authors:  Ankita Singhal; Ying Guo; Milos Matkovic; Gebhard Schertler; Xavier Deupi; Elsa Cy Yan; Joerg Standfuss
Journal:  EMBO Rep       Date:  2016-07-25       Impact factor: 8.807

7.  Functional Impact of the G279S Substitution in the Adenosine A1-Receptor (A1R-G279S7.44), a Mutation Associated with Parkinson's Disease.

Authors:  Shahrooz Nasrollahi-Shirazi; Daniel Szöllösi; Qiong Yang; Edin Muratspahic; Ali El-Kasaby; Sonja Sucic; Thomas Stockner; Christian Nanoff; Michael Freissmuth
Journal:  Mol Pharmacol       Date:  2020-09       Impact factor: 4.436

8.  Rejection of the biophoton hypothesis on the origin of photoreceptor dark noise.

Authors:  Victor I Govardovskii; Luba A Astakhova; Alexander Yu Rotov; Michael L Firsov
Journal:  J Gen Physiol       Date:  2019-04-16       Impact factor: 4.086

  8 in total

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