Literature DB >> 19495424

Modelling HIV immune response and validation with clinical data.

H T Banks1, M Davidian, Shuhua Hu, Grace M Kepler, E S Rosenberg.   

Abstract

A system of ordinary differential equations is formulated to describe the pathogenesis of HIV infection, wherein certain features that have been shown to be important by recent experimental research are incorporated in the model. These include the role of CD4+ memory cells that serve as a major reservoir of latently infected cells, a critical role for T-helper cells in the generation of CD8 memory cells capable of efficient recall response, and stimulation by antigens other than HIV. A stability analysis illustrates the capability of this model in admitting multiple locally asymptotically stable (locally a.s.) off-treatment equilibria.We show that this more biologically detailed model can exhibit the phenomenon of transient viremia experienced by some patients on therapy with viral load levels suppressed below the detection limit. We also show that the loss of CD4+ T-cell help in the generation of CD8+ memory cells leads to larger peak values for the viral load during transient viremia. Censored clinical data is used to obtain parameter estimates. We demonstrate that using a reduced set of 16 free parameters, obtained by fixing some parameters at their population averages, the model provides reasonable fits to the patient data and, moreover, that it exhibits good predictive capability. We further show that parameter values obtained for most clinical patients do not admit multiple locally a.s off-treatment equilibria. This suggests that treatment to move from a high viral load equilibrium state to an equilibrium state with a lower (or zero) viral load is not possible for these patients.

Entities:  

Keywords:  HIV; censored data; immune response; inverse problems; model prediction; multiple equilibria

Mesh:

Substances:

Year:  2008        PMID: 19495424      PMCID: PMC2689816          DOI: 10.1080/17513750701813184

Source DB:  PubMed          Journal:  J Biol Dyn        ISSN: 1751-3758            Impact factor:   2.179


  34 in total

1.  Long-term stability of diverse immunological memory.

Authors:  C Utzny; N J Burroughs
Journal:  J Theor Biol       Date:  2001-08-21       Impact factor: 2.691

2.  CD4+ T cells are required for secondary expansion and memory in CD8+ T lymphocytes.

Authors:  Edith M Janssen; Edward E Lemmens; Tom Wolfe; Urs Christen; Matthias G von Herrath; Stephen P Schoenberger
Journal:  Nature       Date:  2003-02-09       Impact factor: 49.962

3.  Long-term follow-up studies confirm the stability of the latent reservoir for HIV-1 in resting CD4+ T cells.

Authors:  Janet D Siliciano; Joleen Kajdas; Diana Finzi; Thomas C Quinn; Karen Chadwick; Joseph B Margolick; Colin Kovacs; Stephen J Gange; Robert F Siliciano
Journal:  Nat Med       Date:  2003-05-18       Impact factor: 53.440

4.  Requirement for CD4 T cell help in generating functional CD8 T cell memory.

Authors:  Devon J Shedlock; Hao Shen
Journal:  Science       Date:  2003-04-11       Impact factor: 47.728

Review 5.  Helping the CD8(+) T-cell response.

Authors:  Michael J Bevan
Journal:  Nat Rev Immunol       Date:  2004-08       Impact factor: 53.106

6.  Immunological and virological impact of highly active antiretroviral therapy initiated during acute HIV-1 infection.

Authors:  Hendrik Streeck; Heiko Jessen; Galit Alter; Nickolas Teigen; Mike T Waring; Arne Jessen; Ingrid Stahmer; Jan van Lunzen; Mathias Lichterfeld; Xiaojiang Gao; Todd M Allen; Mary Carrington; Bruce D Walker; Juergen K Rockstroh; Marcus Altfeld
Journal:  J Infect Dis       Date:  2006-08-15       Impact factor: 5.226

Review 7.  Similarities and differences in CD4+ and CD8+ effector and memory T cell generation.

Authors:  Robert A Seder; Rafi Ahmed
Journal:  Nat Immunol       Date:  2003-09       Impact factor: 25.606

8.  Population dynamics of immune responses to persistent viruses.

Authors:  M A Nowak; C R Bangham
Journal:  Science       Date:  1996-04-05       Impact factor: 47.728

9.  Risks and benefits of structured antiretroviral drug therapy interruptions in HIV-1 infection.

Authors:  S Bonhoeffer; M Rembiszewski; G M Ortiz; D F Nixon
Journal:  AIDS       Date:  2000-10-20       Impact factor: 4.177

10.  Longitudinal analysis of clinical markers following antiretroviral therapy initiated during acute or early HIV type 1 infection.

Authors:  Sigall Kassutto; Kaveh Maghsoudi; Mary N Johnston; Gregory K Robbins; Nicole C Burgett; Paul E Sax; Daniel Cohen; Eunice Pae; Ben Davis; Kimon Zachary; Nesli Basgoz; Erika M C D'agata; Victor DeGruttola; Bruce D Walker; Eric S Rosenberg
Journal:  Clin Infect Dis       Date:  2006-02-27       Impact factor: 9.079

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  14 in total

1.  Information content in data sets for a nucleated-polymerization model.

Authors:  H T Banks; Marie Doumic; Carola Kruse; Stephanie Prigent; Human Rezaei
Journal:  J Biol Dyn       Date:  2015-06-05       Impact factor: 2.179

2.  Modelling and optimal control of immune response of renal transplant recipients.

Authors:  H T Banks; Shuhua Hu; Taesoo Jang; Hee-Dae Kwon
Journal:  J Biol Dyn       Date:  2012-02-01       Impact factor: 2.179

3.  Experimental Design for Vector Output Systems.

Authors:  H T Banks; K L Rehm
Journal:  Inverse Probl Sci Eng       Date:  2014-01-01       Impact factor: 1.950

4.  Modeling Immune Response to BK Virus Infection and Donor Kidney in Renal Transplant Recipients.

Authors:  H T Banks; Shuhua Hu; Kathryn Link; Eric S Rosenberg; Sheila Mitsuma; Lauren Rosario
Journal:  Inverse Probl Sci Eng       Date:  2015-03-13       Impact factor: 1.950

5.  A Dynamical Modeling Approach for Analysis of Longitudinal Clinical Trials in the Presence of Missing Endpoints.

Authors:  H T Banks; Shuhua Hu; Eric Rosenberg
Journal:  Appl Math Lett       Date:  2016-08-02       Impact factor: 4.055

6.  Comparison of Optimal Design Methods in Inverse Problems.

Authors:  H T Banks; Kathleen Holm; Franz Kappel
Journal:  Inverse Probl       Date:  2011-07-01       Impact factor: 2.407

7.  Host immune responses that promote initial HIV spread.

Authors:  K Wendelsdorf; G Dean; Shuhua Hu; S Nordone; H T Banks
Journal:  J Theor Biol       Date:  2011-08-22       Impact factor: 2.691

8.  Immuno-modulatory strategies for reduction of HIV reservoir cells.

Authors:  H T Banks; Kevin B Flores; Shuhua Hu; Eric Rosenberg; Maria Buzon; Xu Yu; Matthias Lichterfeld
Journal:  J Theor Biol       Date:  2015-02-17       Impact factor: 2.691

9.  Model Comparison Tests to Determine Data Information Content.

Authors:  H T Banks; J E Banks; Kathryn Link; J A Rosenheim; Chelsea Ross; K A Tillman
Journal:  Appl Math Lett       Date:  2015-01-01       Impact factor: 4.055

10.  A Model for HCMV Infection in Immunosuppressed Patients.

Authors:  G M Kepler; H T Banks; M Davidian; E S Rosenberg
Journal:  Math Comput Model       Date:  2009-04
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