Literature DB >> 19487043

Feature-based registration of histopathology images with different stains: an application for computerized follicular lymphoma prognosis.

Lee Cooper1, Olcay Sertel, Jun Kong, Gerard Lozanski, Kun Huang, Metin Gurcan.   

Abstract

Follicular lymphoma (FL) is the second most common type of non-Hodgkin's lymphoma. Manual histological grading of FL is subject to remarkable inter- and intra-reader variations. A promising approach to grading is the development of a computer-assisted system that improves consistency and precision. Correlating information from adjacent slides with different stain types requires establishing spatial correspondences between the digitized section pair through a precise non-rigid image registration. However, the dissimilar appearances of the different stain types challenges existing registration methods. This study proposes a method for the automatic non-rigid registration of histological section images with different stain types. This method is based on matching high level features that are representative of small anatomical structures. This choice of feature provides a rich matching environment, but also results in a high mismatch probability. Matching confidence is increased by establishing local groups of coherent features through geometric reasoning. The proposed method is validated on a set of FL images representing different disease stages. Statistical analysis demonstrates that given a proper feature set the accuracy of automatic registration is comparable to manual registration.

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Year:  2009        PMID: 19487043      PMCID: PMC3324104          DOI: 10.1016/j.cmpb.2009.04.012

Source DB:  PubMed          Journal:  Comput Methods Programs Biomed        ISSN: 0169-2607            Impact factor:   5.428


  11 in total

Review 1.  Non-rigid image registration: theory and practice.

Authors:  W R Crum; T Hartkens; D L G Hill
Journal:  Br J Radiol       Date:  2004       Impact factor: 3.039

Review 2.  Treatment strategies in follicular lymphomas: current status and future perspectives.

Authors:  Wolfgang Hiddemann; Christian Buske; Martin Dreyling; Oliver Weigert; Georg Lenz; Roswitha Forstpointner; Christina Nickenig; Michael Unterhalt
Journal:  J Clin Oncol       Date:  2005-09-10       Impact factor: 44.544

3.  Rb is critical in a mammalian tissue stem cell population.

Authors:  Pamela L Wenzel; Lizhao Wu; Alain de Bruin; Jean-Leon Chong; Wen-Yi Chen; Geoffrey Dureska; Emily Sites; Tony Pan; Ashish Sharma; Kun Huang; Randall Ridgway; Kishore Mosaliganti; Richard Sharp; Raghu Machiraju; Joel Saltz; Hideyuki Yamamoto; James C Cross; Michael L Robinson; Gustavo Leone
Journal:  Genes Dev       Date:  2007-01-01       Impact factor: 11.361

4.  Multimodality image registration by maximization of mutual information.

Authors:  F Maes; A Collignon; D Vandermeulen; G Marchal; P Suetens
Journal:  IEEE Trans Med Imaging       Date:  1997-04       Impact factor: 10.048

5.  Use of the working formulation for non-Hodgkin's lymphoma in epidemiologic studies: agreement between reported diagnoses and a panel of experienced pathologists.

Authors:  F Dick; S VanLier; P Banks; G Frizzera; G Witrak; R Gibson; G Everett; L Schuman; P Isacson; G O'Conor
Journal:  J Natl Cancer Inst       Date:  1987-06       Impact factor: 13.506

6.  Computer-aided reconstruction of neuron trees from several serial sections.

Authors:  J J Capowski
Journal:  Comput Biomed Res       Date:  1977-12

7.  Three-dimensional average-shape atlas of the honeybee brain and its applications.

Authors:  Robert Brandt; Torsten Rohlfing; Jürgen Rybak; Sabine Krofczik; Alexander Maye; Malte Westerhoff; Hans-Christian Hege; Randolf Menzel
Journal:  J Comp Neurol       Date:  2005-11-07       Impact factor: 3.215

8.  Criteria for the cytologic subclassification of follicular lymphomas: a proposed alternative method.

Authors:  R B Mann; C W Berard
Journal:  Hematol Oncol       Date:  1983 Apr-Jun       Impact factor: 5.271

9.  Three-dimensional reconstruction and quantification of cervical carcinoma invasion fronts from histological serial sections.

Authors:  Ulf-Dietrich Braumann; Jens-Peer Kuska; Jens Einenkel; Lars-Christian Horn; Markus Löffler; Michael Höckel
Journal:  IEEE Trans Med Imaging       Date:  2005-10       Impact factor: 10.048

10.  Morphological subclassification of follicular lymphoma: variability of diagnoses among hematopathologists, a collaborative study between the Repository Center and Pathology Panel for Lymphoma Clinical Studies.

Authors:  G E Metter; B N Nathwani; J S Burke; C D Winberg; R B Mann; M Barcos; C R Kjeldsberg; C C Whitcomb; D O Dixon; T P Miller
Journal:  J Clin Oncol       Date:  1985-01       Impact factor: 44.544

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  22 in total

1.  Registration of whole immunohistochemical slide images: an efficient way to characterize biomarker colocalization.

Authors:  Xavier Moles Lopez; Paul Barbot; Yves-Rémi Van Eycke; Laurine Verset; Anne-Laure Trépant; Lionel Larbanoix; Isabelle Salmon; Christine Decaestecker
Journal:  J Am Med Inform Assoc       Date:  2014-08-14       Impact factor: 4.497

2.  Histology image analysis for carcinoma detection and grading.

Authors:  Lei He; L Rodney Long; Sameer Antani; George R Thoma
Journal:  Comput Methods Programs Biomed       Date:  2012-03-20       Impact factor: 5.428

Review 3.  Informatics Approaches to Address New Challenges in the Classification of Lymphoid Malignancies.

Authors:  Jacob Jordan; Jordan S Goldstein; David L Jaye; Metin Gurcan; Christopher R Flowers; Lee A D Cooper
Journal:  JCO Clin Cancer Inform       Date:  2018-02-09

4.  Automatic classification of lymphoma images with transform-based global features.

Authors:  Nikita V Orlov; Wayne W Chen; David Mark Eckley; Tomasz J Macura; Lior Shamir; Elaine S Jaffe; Ilya G Goldberg
Journal:  IEEE Trans Inf Technol Biomed       Date:  2010-07

5.  Automatic detection of melanoma progression by histological analysis of secondary sites.

Authors:  Nikita V Orlov; Ashani T Weeraratna; Stephen M Hewitt; Christopher E Coletta; John D Delaney; D Mark Eckley; Lior Shamir; Ilya G Goldberg
Journal:  Cytometry A       Date:  2012-03-29       Impact factor: 4.355

6.  Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2.

Authors:  Shahid H Bokhari; Ümit V Çatalyürek; Metin N Gurcan
Journal:  Concurr Comput       Date:  2014-12-01       Impact factor: 1.536

7.  Software-automated counting of Ki-67 proliferation index correlates with pathologic grade and disease progression of follicular lymphomas.

Authors:  Mark A Samols; Nathan E Smith; Jonathan M Gerber; Milena Vuica-Ross; Christopher D Gocke; Kathleen H Burns; Michael J Borowitz; Toby C Cornish; Amy S Duffield
Journal:  Am J Clin Pathol       Date:  2013-10       Impact factor: 2.493

8.  A Framework for 3D Vessel Analysis using Whole Slide Images of Liver Tissue Sections.

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9.  Robot-Guided Atomic Force Microscopy for Mechano-Visual Phenotyping of Cancer Specimens.

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Journal:  Microsc Microanal       Date:  2015-09-07       Impact factor: 4.127

10.  Histopathological image analysis for centroblasts classification through dimensionality reduction approaches.

Authors:  Evgenios N Kornaropoulos; M Khalid Khan Niazi; Gerard Lozanski; Metin N Gurcan
Journal:  Cytometry A       Date:  2013-12-26       Impact factor: 4.355

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