Literature DB >> 16229416

Three-dimensional reconstruction and quantification of cervical carcinoma invasion fronts from histological serial sections.

Ulf-Dietrich Braumann1, Jens-Peer Kuska, Jens Einenkel, Lars-Christian Horn, Markus Löffler, Michael Höckel.   

Abstract

The analysis of the three-dimensional (3-D) structure of tumoral invasion fronts of carcinoma of the uterine cervix is the prerequisite for understanding their architectural-functional relationship. The variation range of the invasion patterns known so far reaches from a smooth tumor-host boundary surface to more diffusely spreading patterns, which all are supposed to have a different prognostic relevance. As a very decisive limitation of previous studies, all morphological assessments just could be done verbally referring to single histological sections. Therefore, the intention of this paper is to get an objective quantification of tumor invasion based on 3-D reconstructed tumoral tissue data. The image processing chain introduced here is capable to reconstruct selected parts of tumor invasion fronts from histological serial sections of remarkable extent (90-500 slices). While potentially gaining good accuracy and reasonably high resolution, microtome cutting of large serial sections especially may induce severe artifacts like distortions, folds, fissures or gaps. Starting from stacks of digitized transmitted light color images, an overall of three registration steps are the main parts of the presented algorithm. By this, we achieved the most detailed 3-D reconstruction of the invasion of solid tumors so far. Once reconstructed, the invasion front of the segmented tumor is quantified using discrete compactness.

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Year:  2005        PMID: 16229416     DOI: 10.1109/42.929614

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  19 in total

1.  Toward routine use of 3D histopathology as a research tool.

Authors:  Nicholas Roberts; Derek Magee; Yi Song; Keeran Brabazon; Mike Shires; Doreen Crellin; Nicolas M Orsi; Richard Quirke; Philip Quirke; Darren Treanor
Journal:  Am J Pathol       Date:  2012-04-09       Impact factor: 4.307

2.  Non-rigid Registration for Large Sets of Microscopic Images on Graphics Processors.

Authors:  Antonio Ruiz; Manuel Ujaldon; Lee Cooper; Kun Huang
Journal:  J Signal Process Syst       Date:  2009-04-01

3.  Registration of whole immunohistochemical slide images: an efficient way to characterize biomarker colocalization.

Authors:  Xavier Moles Lopez; Paul Barbot; Yves-Rémi Van Eycke; Laurine Verset; Anne-Laure Trépant; Lionel Larbanoix; Isabelle Salmon; Christine Decaestecker
Journal:  J Am Med Inform Assoc       Date:  2014-08-14       Impact factor: 4.497

4.  A Gauss-Seidel iteration scheme for reference-free 3-D histological image reconstruction.

Authors:  Simone Gaffling; Volker Daum; Stefan Steidl; Andreas Maier; Harald Kostler; Joachim Hornegger
Journal:  IEEE Trans Med Imaging       Date:  2014-10-08       Impact factor: 10.048

5.  Neuromorphometry of primary brain tumors by magnetic resonance imaging.

Authors:  Nidiyare Hevia-Montiel; Pedro I Rodriguez-Perez; Paul J Lamothe-Molina; Alfonso Arellano-Reynoso; Ernesto Bribiesca; Marco A Alegria-Loyola
Journal:  J Med Imaging (Bellingham)       Date:  2015-05-12

6.  Tensor classification of N-point correlation function features for histology tissue segmentation.

Authors:  Kishore Mosaliganti; Firdaus Janoos; Okan Irfanoglu; Randall Ridgway; Raghu Machiraju; Kun Huang; Joel Saltz; Gustavo Leone; Michael Ostrowski
Journal:  Med Image Anal       Date:  2008-07-25       Impact factor: 8.545

7.  An imaging workflow for characterizing phenotypical change in large histological mouse model datasets.

Authors:  Kishore Mosaliganti; Tony Pan; Randall Ridgway; Richard Sharp; Lee Cooper; Alex Gulacy; Ashish Sharma; Okan Irfanoglu; Raghu Machiraju; Tahsin Kurc; Alain de Bruin; Pamela Wenzel; Gustavo Leone; Joel Saltz; Kun Huang
Journal:  J Biomed Inform       Date:  2008-04-07       Impact factor: 6.317

8.  Feature-based registration of histopathology images with different stains: an application for computerized follicular lymphoma prognosis.

Authors:  Lee Cooper; Olcay Sertel; Jun Kong; Gerard Lozanski; Kun Huang; Metin Gurcan
Journal:  Comput Methods Programs Biomed       Date:  2009-05-31       Impact factor: 5.428

9.  Shell feature: a new radiomics descriptor for predicting distant failure after radiotherapy in non-small cell lung cancer and cervix cancer.

Authors:  Hongxia Hao; Zhiguo Zhou; Shulong Li; Genevieve Maquilan; Michael R Folkert; Puneeth Iyengar; Kenneth D Westover; Kevin Albuquerque; Fang Liu; Hak Choy; Robert Timmerman; Lin Yang; Jing Wang
Journal:  Phys Med Biol       Date:  2018-05-02       Impact factor: 3.609

10.  Robot-Guided Atomic Force Microscopy for Mechano-Visual Phenotyping of Cancer Specimens.

Authors:  Wenjin Chen; Zachary Brandes; Rajarshi Roy; Marina Chekmareva; Hardik J Pandya; Jaydev P Desai; David J Foran
Journal:  Microsc Microanal       Date:  2015-09-07       Impact factor: 4.127

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