Literature DB >> 25598745

Massively Multithreaded Maxflow for Image Segmentation on the Cray XMT-2.

Shahid H Bokhari1, Ümit V Çatalyürek2, Metin N Gurcan3.   

Abstract

Image segmentation is a very important step in the computerized analysis of digital images. The maxflow mincut approach has been successfully used to obtain minimum energy segmentations of images in many fields. Classical algorithms for maxflow in networks do not directly lend themselves to efficient parallel implementations on contemporary parallel processors. We present the results of an implementation of Goldberg-Tarjan preflow-push algorithm on the Cray XMT-2 massively multithreaded supercomputer. This machine has hardware support for 128 threads in each physical processor, a uniformly accessible shared memory of up to 4 TB and hardware synchronization for each 64 bit word. It is thus well-suited to the parallelization of graph theoretic algorithms, such as preflow-push. We describe the implementation of the preflow-push code on the XMT-2 and present the results of timing experiments on a series of synthetically generated as well as real images. Our results indicate very good performance on large images and pave the way for practical applications of this machine architecture for image analysis in a production setting. The largest images we have run are 320002 pixels in size, which are well beyond the largest previously reported in the literature.

Entities:  

Keywords:  Cray XMT-2; image segmentation; massively parallel processing; maxflow; multithreading

Year:  2014        PMID: 25598745      PMCID: PMC4295505          DOI: 10.1002/cpe.3181

Source DB:  PubMed          Journal:  Concurr Comput        ISSN: 1532-0626            Impact factor:   1.536


  9 in total

1.  A parallel graph decomposition algorithm for DNA sequencing with nanopores.

Authors:  Shahid H Bokhari; Jon R Sauer
Journal:  Bioinformatics       Date:  2004-11-11       Impact factor: 6.937

2.  An experimental comparison of min-cut/max-flow algorithms for energy minimization in vision.

Authors:  Yuri Boykov; Vladimir Kolmogorov
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2004-09       Impact factor: 6.226

3.  Parallelizing a DNA simulation code for the Cray MTA-2.

Authors:  Shahid H Bokhari; Matthew A Glaser; Harry F Jordan; Yves Lansac; Jon R Sauer; Bart Van Zeghbroeck
Journal:  Proc IEEE Comput Soc Bioinform Conf       Date:  2002

Review 4.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

5.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

6.  Automatic graph-cut based segmentation of bones from knee magnetic resonance images for osteoarthritis research.

Authors:  Sufyan Y Ababneh; Jeff W Prescott; Metin N Gurcan
Journal:  Med Image Anal       Date:  2011-02-24       Impact factor: 8.545

7.  Semi-automated segmentation to assess the lateral meniscus in normal and osteoarthritic knees.

Authors:  M S Swanson; J W Prescott; T M Best; K Powell; R D Jackson; F Haq; M N Gurcan
Journal:  Osteoarthritis Cartilage       Date:  2009-11-05       Impact factor: 6.576

8.  Feature-based registration of histopathology images with different stains: an application for computerized follicular lymphoma prognosis.

Authors:  Lee Cooper; Olcay Sertel; Jun Kong; Gerard Lozanski; Kun Huang; Metin Gurcan
Journal:  Comput Methods Programs Biomed       Date:  2009-05-31       Impact factor: 5.428

9.  GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support.

Authors:  Metin N Gurcan; Tony Pan; Ashish Sharma; Tahsin Kurc; Scott Oster; Stephen Langella; Shannon Hastings; Khan M Siddiqui; Eliot L Siegel; Joel Saltz
Journal:  J Digit Imaging       Date:  2007-06       Impact factor: 4.056

  9 in total

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