Literature DB >> 19484370

A combined LS-SVM & MLR QSAR workflow for predicting the inhibition of CXCR3 receptor by quinazolinone analogs.

Antreas Afantitis1, Georgia Melagraki, Haralambos Sarimveis, Panayiotis A Koutentis, Olga Igglessi-Markopoulou, George Kollias.   

Abstract

A novel QSAR workflow is constructed that combines MLR with LS-SVM classification techniques for the identification of quinazolinone analogs as "active" or "non-active" CXCR3 antagonists. The accuracy of the LS-SVM classification technique for the training set and test was 100% and 90%, respectively. For the "active" analogs a validated MLR QSAR model estimates accurately their I-IP10 IC(50) inhibition values. The accuracy of the QSAR model (R (2) = 0.80) is illustrated using various evaluation techniques, such as leave-one-out procedure (R(LOO2)) = 0.67) and validation through an external test set (R(pred2) = 0.78). The key conclusion of this study is that the selected molecular descriptors, Highest Occupied Molecular Orbital energy (HOMO), Principal Moment of Inertia along X and Y axes PMIX and PMIZ, Polar Surface Area (PSA), Presence of triple bond (PTrplBnd), and Kier shape descriptor ((1) kappa), demonstrate discriminatory and pharmacophore abilities.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19484370     DOI: 10.1007/s11030-009-9163-7

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  30 in total

1.  Design and optimization of imidazole derivatives as potent CXCR3 antagonists.

Authors:  Xiaohui Du; Xiaoqi Chen; Jeffrey T Mihalic; Jeffrey Deignan; Jason Duquette; An-Rong Li; Bryan Lemon; Ji Ma; Shichang Miao; Karen Ebsworth; Timothy J Sullivan; George Tonn; Tassie L Collins; Julio C Medina
Journal:  Bioorg Med Chem Lett       Date:  2007-11-28       Impact factor: 2.823

Review 2.  Virtual screening and its integration with modern drug design technologies.

Authors:  Rafael V C Guido; Glaucius Oliva; Adriano D Andricopulo
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

3.  Predictive QSAR workflow for the in silico identification and screening of novel HDAC inhibitors.

Authors:  Georgia Melagraki; Antreas Afantitis; Haralambos Sarimveis; Panayiotis A Koutentis; George Kollias; Olga Igglessi-Markopoulou
Journal:  Mol Divers       Date:  2009-02-10       Impact factor: 2.943

4.  Additive SMILES-based optimal descriptors in QSAR modelling bee toxicity: Using rare SMILES attributes to define the applicability domain.

Authors:  A A Toropov; E Benfenati
Journal:  Bioorg Med Chem       Date:  2008-03-23       Impact factor: 3.641

5.  Calculation of quantum-mechanical descriptors for QSPR at the DFT level: is it necessary?

Authors:  Tomasz Puzyn; Noriyuki Suzuki; Maciej Haranczyk; Janusz Rak
Journal:  J Chem Inf Model       Date:  2008-05-30       Impact factor: 4.956

6.  Quantitative structure-activity relationships for small non-peptide antagonists of CXCR2: indirect 3D approach using the frontal polygon method.

Authors:  Andrei I Khlebnikov; Igor A Schepetkin; Mark T Quinn
Journal:  Bioorg Med Chem       Date:  2005-09-22       Impact factor: 3.641

7.  A novel QSAR model for predicting the inhibition of CXCR3 receptor by 4-N-aryl-[1,4] diazepane ureas.

Authors:  Antreas Afantitis; Georgia Melagraki; Haralambos Sarimveis; Olga Igglessi-Markopoulou; George Kollias
Journal:  Eur J Med Chem       Date:  2008-07-10       Impact factor: 6.514

8.  Discovery and optimization of a series of quinazolinone-derived antagonists of CXCR3.

Authors:  Michael Johnson; An-Rong Li; Jiwen Liu; Zice Fu; Liusheng Zhu; Shichang Miao; Xuemei Wang; Qingge Xu; Alan Huang; Andrew Marcus; Feng Xu; Karen Ebsworth; Emmanuel Sablan; Jay Danao; Jeff Kumer; Dan Dairaghi; Chris Lawrence; Tim Sullivan; George Tonn; Thomas Schall; Tassie Collins; Julio Medina
Journal:  Bioorg Med Chem Lett       Date:  2007-04-06       Impact factor: 2.823

9.  3D-QSAR studies of substituted 1-(3, 3-diphenylpropyl)-piperidinyl amides and ureas as CCR5 receptor antagonists.

Authors:  Yogesh D Aher; Avantika Agrawal; Prasad V Bharatam; Prabha Garg
Journal:  J Mol Model       Date:  2007-02-16       Impact factor: 1.810

10.  Identification of a series of novel derivatives as potent HCV inhibitors by a ligand-based virtual screening optimized procedure.

Authors:  Georgia Melagraki; Antreas Afantitis; Haralambos Sarimveis; Panayiotis A Koutentis; John Markopoulos; Olga Igglessi-Markopoulou
Journal:  Bioorg Med Chem       Date:  2007-08-25       Impact factor: 3.641

View more
  4 in total

1.  Molecular dynamics directed CoMFA studies on carbocyclic neuraminidase inhibitors.

Authors:  Swapnil Chavan; Sagar Bhayye; M Elizabeth Sobhia
Journal:  Mol Divers       Date:  2011-09-16       Impact factor: 2.943

2.  Prediction of PKCθ inhibitory activity using the Random Forest Algorithm.

Authors:  Ming Hao; Yan Li; Yonghua Wang; Shuwei Zhang
Journal:  Int J Mol Sci       Date:  2010-09-20       Impact factor: 5.923

3.  QSAR study of C allosteric binding site of HCV NS5B polymerase inhibitors by support vector machine.

Authors:  Eslam Pourbasheer; Siavash Riahi; Mohammad Reza Ganjali; Parviz Norouzi
Journal:  Mol Divers       Date:  2010-10-08       Impact factor: 2.943

4.  Support vector machine classification of streptavidin-binding aptamers.

Authors:  Xinliang Yu; Yixiong Yu; Qun Zeng
Journal:  PLoS One       Date:  2014-06-13       Impact factor: 3.240

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.