Literature DB >> 18395455

Additive SMILES-based optimal descriptors in QSAR modelling bee toxicity: Using rare SMILES attributes to define the applicability domain.

A A Toropov1, E Benfenati.   

Abstract

The additive SMILES-based optimal descriptors have been used for modelling the bee toxicity. The influence of relative prevalence of the SMILES attributes in a training and test sets to the models for bee toxicity has been analysed. Avoiding the use of rare attributes improves statistical characteristics of the model on the external test set. The possibility of using the probability of the presence of SMILES attributes in training and test sets for rational definition of the applicability domain is discussed.

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Year:  2008        PMID: 18395455     DOI: 10.1016/j.bmc.2008.03.048

Source DB:  PubMed          Journal:  Bioorg Med Chem        ISSN: 0968-0896            Impact factor:   3.641


  8 in total

1.  CORAL: QSPR models for solubility of [C60] and [C70] fullerene derivatives.

Authors:  Alla P Toropova; Andrey A Toropov; Emilio Benfenati; Giuseppina Gini; Danuta Leszczynska; Jerzy Leszczynski
Journal:  Mol Divers       Date:  2010-03-27       Impact factor: 2.943

2.  QSAR-modeling of toxicity of organometallic compounds by means of the balance of correlations for InChI-based optimal descriptors.

Authors:  A A Toropov; A P Toropova; E Benfenati
Journal:  Mol Divers       Date:  2009-05-19       Impact factor: 2.943

3.  A combined LS-SVM & MLR QSAR workflow for predicting the inhibition of CXCR3 receptor by quinazolinone analogs.

Authors:  Antreas Afantitis; Georgia Melagraki; Haralambos Sarimveis; Panayiotis A Koutentis; Olga Igglessi-Markopoulou; George Kollias
Journal:  Mol Divers       Date:  2009-05-30       Impact factor: 2.943

4.  Estimation of the applicability domain of kernel-based machine learning models for virtual screening.

Authors:  Nikolas Fechner; Andreas Jahn; Georg Hinselmann; Andreas Zell
Journal:  J Cheminform       Date:  2010-03-11       Impact factor: 5.514

5.  QSAR study and molecular design of open-chain enaminones as anticonvulsant agents.

Authors:  Juan C Garro Martinez; Pablo R Duchowicz; Mario R Estrada; Graciela N Zamarbide; Eduardo A Castro
Journal:  Int J Mol Sci       Date:  2011-12-14       Impact factor: 5.923

6.  Additive SMILES-based carcinogenicity models: Probabilistic principles in the search for robust predictions.

Authors:  Andrey A Toropov; Alla P Toropova; Emilio Benfenati
Journal:  Int J Mol Sci       Date:  2009-07-08       Impact factor: 6.208

Review 7.  In silico toxicology: computational methods for the prediction of chemical toxicity.

Authors:  Arwa B Raies; Vladimir B Bajic
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2016-01-06

8.  Amino substituted nitrogen heterocycle ureas as kinase insert domain containing receptor (KDR) inhibitors: Performance of structure-activity relationship approaches.

Authors:  Hayriye Yilmaz; Natalia Sizochenko; Bakhtiyor Rasulev; Andrey Toropov; Yahya Guzel; Viktor Kuz'min; Danuta Leszczynska; Jerzy Leszczynski
Journal:  J Food Drug Anal       Date:  2015-04-01       Impact factor: 6.157

  8 in total

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