Literature DB >> 20888470

Unified data resource for cryo-EM.

Catherine L Lawson1.   

Abstract

Three-dimensional (3D) cryoelectron microscopy reconstruction methods are uniquely able to reveal structures of many important macromolecules and macromolecular complexes. EMDataBank.org, a joint effort of the Protein Databank in Europe (PDBe), the Research Collaboratory for Structural Bioinformatics (RCSB), and the National Center for Macromolecular Imaging (NCMI), is a "one-stop shop" resource for global deposition and retrieval of cryo-EM map, model, and associated metadata. The resource unifies public access to the two major EM Structural Data archives: EM Data Bank (EMDB) and Protein Data Bank (PDB), and facilitates use of EM structural data of macromolecules and macromolecular complexes by the wider scientific community.
Copyright © 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20888470      PMCID: PMC2966391          DOI: 10.1016/S0076-6879(10)83004-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  83 in total

1.  Structure of West Nile virus.

Authors:  Suchetana Mukhopadhyay; Bong-Suk Kim; Paul R Chipman; Michael G Rossmann; Richard J Kuhn
Journal:  Science       Date:  2003-10-10       Impact factor: 47.728

2.  Structure determination of the phiX174 closed procapsid.

Authors:  T Dokland; R McKenna; D M Sherman; B R Bowman; W F Bean; M G Rossmann
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

3.  The atomic structure of the bluetongue virus core.

Authors:  J M Grimes; J N Burroughs; P Gouet; J M Diprose; R Malby; S Ziéntara; P P Mertens; D I Stuart
Journal:  Nature       Date:  1998-10-01       Impact factor: 49.962

4.  Structure of a viral procapsid with molecular scaffolding.

Authors:  T Dokland; R McKenna; L L Ilag; B R Bowman; N L Incardona; B A Fane; M G Rossmann
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 5.  Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Authors:  Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

6.  A recombinant envelope protein vaccine against West Nile virus.

Authors:  Michel Ledizet; Kalipada Kar; Harald G Foellmer; Tian Wang; Sandra L Bushmich; John F Anderson; Erol Fikrig; Raymond A Koski
Journal:  Vaccine       Date:  2005-04-06       Impact factor: 3.641

7.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

Authors:  R Henderson; J M Baldwin; T A Ceska; F Zemlin; E Beckmann; K H Downing
Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

8.  Structural mechanism of SDS-induced enzyme activity of scorpion hemocyanin revealed by electron cryomicroscopy.

Authors:  Yao Cong; Qinfen Zhang; David Woolford; Thorsten Schweikardt; Htet Khant; Matthew Dougherty; Steven J Ludtke; Wah Chiu; Heinz Decker
Journal:  Structure       Date:  2009-05-13       Impact factor: 5.006

9.  Structural basis of West Nile virus neutralization by a therapeutic antibody.

Authors:  Grant E Nybakken; Theodore Oliphant; Syd Johnson; Stephen Burke; Michael S Diamond; Daved H Fremont
Journal:  Nature       Date:  2005-09-29       Impact factor: 49.962

10.  From electron microscopy to X-ray crystallography: molecular-replacement case studies.

Authors:  Yong Xiong
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-12-05
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  2 in total

1.  Likelihood-based classification of cryo-EM images using FREALIGN.

Authors:  Dmitry Lyumkis; Axel F Brilot; Douglas L Theobald; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2013-07-17       Impact factor: 2.867

2.  EMDataBank unified data resource for 3DEM.

Authors:  Catherine L Lawson; Ardan Patwardhan; Matthew L Baker; Corey Hryc; Eduardo Sanz Garcia; Brian P Hudson; Ingvar Lagerstedt; Steven J Ludtke; Grigore Pintilie; Raul Sala; John D Westbrook; Helen M Berman; Gerard J Kleywegt; Wah Chiu
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

  2 in total

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