Literature DB >> 19439417

Cryogenic and laser photoexcitation studies identify multiple roles for active site residues in the light-driven enzyme protochlorophyllide oxidoreductase.

Binuraj R K Menon1, Jonathan P Waltho, Nigel S Scrutton, Derren J Heyes.   

Abstract

The light-activated enzyme NADPH-protochlorophyllide oxidoreductase (POR) catalyzes the trans addition of hydrogen across the C-17-C-18 double bond of protochlorophyllide (Pchlide), a key step in chlorophyll biosynthesis. Similar to other members of the short chain alcohol dehydrogenase/reductase family of enzymes, POR contains a conserved Tyr and Lys residue in the enzyme active site, which are implicated in a proposed reaction mechanism involving proton transfer from the Tyr hydoxyl group to Pchlide. We have analyzed a number of POR variant enzymes altered in these conserved residues using a combination of steady-state turnover, laser photoexcitation studies, and low temperature fluorescence spectroscopy. None of the mutations completely abolished catalytic activity. We demonstrate their importance to catalysis by defining multiple roles in the overall reaction pathway. Mutation of either residue impairs formation of the ground state ternary enzyme-substrate complex, pointing to a key role in substrate binding. By analyzing the most active variant (Y193F), we show that Tyr-193 participates in proton transfer to Pchlide and stabilizes the Pchlide excited state, enabling hydride transfer from NADPH to Pchilde. Thus, in addition to confirming the probable identity of the proton donor in Pchlide reduction, our work defines additional roles for these residues in facilitating hydride transfer through stabilization of the ground and excited states of the ternary enzyme complex.

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Year:  2009        PMID: 19439417      PMCID: PMC2709359          DOI: 10.1074/jbc.M109.020719

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  35 in total

1.  Charge transfer complexing of NAD with phenol and influence of phenol substituents on complex stability.

Authors:  C M Henneke; R T Wedding
Journal:  Arch Biochem Biophys       Date:  1975-06       Impact factor: 4.013

2.  Kinetic characterisation of the light-driven protochlorophyllide oxidoreductase (POR) from Thermosynechococcus elongatus.

Authors:  Michael J McFarlane; C Neil Hunter; Derren J Heyes
Journal:  Photochem Photobiol Sci       Date:  2005-09-09       Impact factor: 3.982

3.  A light-dependent complementation system for analysis of NADPH:protochlorophyllide oxidoreductase: identification and mutagenesis of two conserved residues that are essential for enzyme activity.

Authors:  H M Wilks; M P Timko
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-31       Impact factor: 11.205

4.  Enzyme dynamics and hydrogen tunnelling in a thermophilic alcohol dehydrogenase.

Authors:  A Kohen; R Cannio; S Bartolucci; J P Klinman
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

5.  Site-directed mutagenesis of the conserved tyrosine 151 of human placental NAD(+)-dependent 15-hydroxyprostaglandin dehydrogenase yields a catalytically inactive enzyme.

Authors:  C M Ensor; H H Tai
Journal:  Biochem Biophys Res Commun       Date:  1991-04-30       Impact factor: 3.575

6.  Alternative proton donors/acceptors in the catalytic mechanism of the glutathione reductase of Escherichia coli: the role of histidine-439 and tyrosine-99.

Authors:  M P Deonarain; A Berry; N S Scrutton; R N Perham
Journal:  Biochemistry       Date:  1989-12-12       Impact factor: 3.162

7.  Crystal structure of a photolyase bound to a CPD-like DNA lesion after in situ repair.

Authors:  Alexandra Mees; Tobias Klar; Petra Gnau; Ulrich Hennecke; Andre P M Eker; Thomas Carell; Lars-Oliver Essen
Journal:  Science       Date:  2004-12-03       Impact factor: 47.728

8.  Structural and mechanistic characteristics of dihydropteridine reductase: a member of the Tyr-(Xaa)3-Lys-containing family of reductases and dehydrogenases.

Authors:  K I Varughese; N H Xuong; P M Kiefer; D A Matthews; J M Whiteley
Journal:  Proc Natl Acad Sci U S A       Date:  1994-06-07       Impact factor: 11.205

9.  Identification and characterization of the product release steps within the catalytic cycle of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

10.  ATP-driven reduction by dark-operative protochlorophyllide oxidoreductase from Chlorobium tepidum mechanistically resembles nitrogenase catalysis.

Authors:  Markus J Bröcker; Simone Virus; Stefanie Ganskow; Peter Heathcote; Dirk W Heinz; Wolf-Dieter Schubert; Dieter Jahn; Jürgen Moser
Journal:  J Biol Chem       Date:  2008-02-05       Impact factor: 5.157

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  15 in total

Review 1.  Photocatalysis as the 'master switch' of photomorphogenesis in early plant development.

Authors:  Derren J Heyes; Shaowei Zhang; Aoife Taylor; Linus O Johannissen; Samantha J O Hardman; Sam Hay; Nigel S Scrutton
Journal:  Nat Plants       Date:  2021-03-08       Impact factor: 15.793

2.  A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Colin Levy; Michiyo Sakuma; David L Robertson; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-02-11       Impact factor: 5.157

3.  Cell growth defect factor1/chaperone-like protein of POR1 plays a role in stabilization of light-dependent protochlorophyllide oxidoreductase in Nicotiana benthamiana and Arabidopsis.

Authors:  Jae-Yong Lee; Ho-Seok Lee; Ji-Young Song; Young Jun Jung; Steffen Reinbothe; Youn-Il Park; Sang Yeol Lee; Hyun-Sook Pai
Journal:  Plant Cell       Date:  2013-10-22       Impact factor: 11.277

4.  Plant Protochlorophyllide Oxidoreductases A and B: CATALYTIC EFFICIENCY AND INITIAL REACTION STEPS.

Authors:  Alessio Garrone; Nataliya Archipowa; Peter F Zipfel; Gudrun Hermann; Benjamin Dietzek
Journal:  J Biol Chem       Date:  2015-09-25       Impact factor: 5.157

5.  Mutagenesis alters the catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Binuraj R K Menon; Paul A Davison; C Neil Hunter; Nigel S Scrutton; Derren J Heyes
Journal:  J Biol Chem       Date:  2009-10-22       Impact factor: 5.157

6.  Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.

Authors:  Chen-Song Dong; Wei-Lun Zhang; Qiao Wang; Yu-Shuai Li; Xiao Wang; Min Zhang; Lin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-31       Impact factor: 11.205

7.  Photocatalytic LPOR forms helical lattices that shape membranes for chlorophyll synthesis.

Authors:  Henry C Nguyen; Michal Gabruk; Arthur A Melo; Jerzy Kruk; Adam Frost
Journal:  Nat Plants       Date:  2021-04-19       Impact factor: 15.793

8.  Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function.

Authors:  Olga Chernomor; Lena Peters; Judith Schneidewind; Anita Loeschcke; Esther Knieps-Grünhagen; Fabian Schmitz; Eric von Lieres; Roger Jan Kutta; Vera Svensson; Karl-Erich Jaeger; Thomas Drepper; Arndt von Haeseler; Ulrich Krauss
Journal:  Mol Biol Evol       Date:  2021-03-09       Impact factor: 16.240

9.  Mechanistic reappraisal of early stage photochemistry in the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Samantha J O Hardman; David Mansell; John M Gardiner; Nigel S Scrutton
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

10.  Excited-state charge separation in the photochemical mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Samantha J O Hardman; Tobias M Hedison; Robin Hoeven; Greg M Greetham; Michael Towrie; Nigel S Scrutton
Journal:  Angew Chem Int Ed Engl       Date:  2014-12-08       Impact factor: 15.336

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