Literature DB >> 26408201

Plant Protochlorophyllide Oxidoreductases A and B: CATALYTIC EFFICIENCY AND INITIAL REACTION STEPS.

Alessio Garrone1, Nataliya Archipowa2, Peter F Zipfel3, Gudrun Hermann4, Benjamin Dietzek1.   

Abstract

The enzyme protochlorophyllide oxidoreductase (POR, EC 1.3.1.33) has a key role in plant development. It catalyzes one of the later steps in chlorophyll synthesis, the light-induced reduction of protochlorophyllide (PChlide) into chlorophyllide (Chlide) in the presence of NADPH. Two isozymes of plant POR, POR A and POR B from barley, which differ in their function during plant life, are compared with respect to their substrate binding affinity, catalytic efficiency, and catalytic mechanism. POR B as compared with POR A shows an 5-fold higher binding affinity for PChlide and an about 6-fold higher catalytic efficiency measured as kcat/Km. Based on the reaction intermediates, which can be trapped at low temperatures the same reaction mechanism operates in both POR A and POR B. In contrast to results reported for POR enzymes from cyanobacteria, the initial light-driven step, which occurs at temperatures below 180 K already involves the full chemistry of the photoreduction and yields the reaction product, Chlide, in an enzyme-bound form. The subsequent dark reactions, which include cofactor (NADP(+)) release and cofactor (NADPH) rebinding, show different temperature dependences for POR A and POR B and suggest a higher conformational flexibility of POR B in the surrounding active center. Both the higher substrate binding affinity and well adapted enzyme dynamics are held responsible for the increased catalytic activity of POR B as compared with POR A.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  NADPH:protochlorophyllide oxidoreductase; chlorophyll; chlorophyll biosynthesis; enzyme kinetics; low temperature absorption spectroscopy; plant biochemistry; reductase; ultraviolet-visible spectroscopy (UV-Vis spectroscopy)

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Year:  2015        PMID: 26408201      PMCID: PMC4653708          DOI: 10.1074/jbc.M115.663161

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  40 in total

1.  NADPH:protochlorophyllide oxidoreductase from Synechocystis: overexpression, purification and preliminary characterisation.

Authors:  D J Heyes; G E Martin; R J Reid; C N Hunter; H M Wilks
Journal:  FEBS Lett       Date:  2000-10-13       Impact factor: 4.124

2.  PORA and PORB, Two Light-Dependent Protochlorophyllide-Reducing Enzymes of Angiosperm Chlorophyll Biosynthesis.

Authors:  S. Reinbothe; C. Reinbothe; N. Lebedev; K. Apel
Journal:  Plant Cell       Date:  1996-05       Impact factor: 11.277

3.  Origin and evolution of the light-dependent protochlorophyllide oxidoreductase (LPOR) genes.

Authors:  J Yang; Q Cheng
Journal:  Plant Biol (Stuttg)       Date:  2004-09       Impact factor: 3.081

4.  Catalytic efficiency of a photoenzyme--an adaptation to natural light conditions.

Authors:  Robert Hanf; Sonja Fey; Michael Schmitt; Gudrun Hermann; Benjamin Dietzek; Jürgen Popp
Journal:  Chemphyschem       Date:  2012-04-13       Impact factor: 3.102

5.  Kinetic characterisation of the light-driven protochlorophyllide oxidoreductase (POR) from Thermosynechococcus elongatus.

Authors:  Michael J McFarlane; C Neil Hunter; Derren J Heyes
Journal:  Photochem Photobiol Sci       Date:  2005-09-09       Impact factor: 3.982

Review 6.  Microscale thermophoresis quantifies biomolecular interactions under previously challenging conditions.

Authors:  Susanne A I Seidel; Patricia M Dijkman; Wendy A Lea; Geert van den Bogaart; Moran Jerabek-Willemsen; Ana Lazic; Jeremiah S Joseph; Prakash Srinivasan; Philipp Baaske; Anton Simeonov; Ilia Katritch; Fernando A Melo; John E Ladbury; Gideon Schreiber; Anthony Watts; Dieter Braun; Stefan Duhr
Journal:  Methods       Date:  2012-12-24       Impact factor: 3.608

7.  A light-dependent complementation system for analysis of NADPH:protochlorophyllide oxidoreductase: identification and mutagenesis of two conserved residues that are essential for enzyme activity.

Authors:  H M Wilks; M P Timko
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-31       Impact factor: 11.205

Review 8.  Excited state dynamics and catalytic mechanism of the light-driven enzyme protochlorophyllide oxidoreductase.

Authors:  Nigel S Scrutton; Marie Louise Groot; Derren J Heyes
Journal:  Phys Chem Chem Phys       Date:  2012-03-14       Impact factor: 3.676

9.  Identification and characterization of the product release steps within the catalytic cycle of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; C Neil Hunter
Journal:  Biochemistry       Date:  2004-06-29       Impact factor: 3.162

10.  Protochlorophyllide excited-state dynamics in organic solvents studied by time-resolved visible and mid-infrared spectroscopy.

Authors:  Olga A Sytina; Ivo H M van Stokkum; Derren J Heyes; C Neil Hunter; Rienk van Grondelle; Marie Louise Groot
Journal:  J Phys Chem B       Date:  2010-04-01       Impact factor: 2.991

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  10 in total

1.  NADPH:protochlorophyllide oxidoreductase B (PORB) action in Arabidopsis thaliana revisited through transgenic expression of engineered barley PORB mutant proteins.

Authors:  Frank Buhr; Abderrahim Lahroussi; Armin Springer; Sachin Rustgi; Diter von Wettstein; Christiane Reinbothe; Steffen Reinbothe
Journal:  Plant Mol Biol       Date:  2017-03-04       Impact factor: 4.076

2.  New insights into the response of maize to fluctuations in the light environment.

Authors:  Jianzhou Qu; Xiaonan Gou; Wenxin Zhang; Ting Li; Jiquan Xue; Dongwei Guo; Shutu Xu
Journal:  Mol Genet Genomics       Date:  2021-02-25       Impact factor: 3.291

Review 3.  Photocatalysis as the 'master switch' of photomorphogenesis in early plant development.

Authors:  Derren J Heyes; Shaowei Zhang; Aoife Taylor; Linus O Johannissen; Samantha J O Hardman; Sam Hay; Nigel S Scrutton
Journal:  Nat Plants       Date:  2021-03-08       Impact factor: 15.793

4.  Transcriptional and post-translational control of chlorophyll biosynthesis by dark-operative protochlorophyllide oxidoreductase in Norway spruce.

Authors:  Tibor Stolárik; Boris Hedtke; Jiří Šantrůček; Petr Ilík; Bernhard Grimm; Andrej Pavlovič
Journal:  Photosynth Res       Date:  2017-02-22       Impact factor: 3.573

5.  SCARECROW gene function is required for photosynthetic development in maize.

Authors:  Thomas E Hughes; Jane A Langdale
Journal:  Plant Direct       Date:  2020-09-09

6.  Crystal structures of cyanobacterial light-dependent protochlorophyllide oxidoreductase.

Authors:  Chen-Song Dong; Wei-Lun Zhang; Qiao Wang; Yu-Shuai Li; Xiao Wang; Min Zhang; Lin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-31       Impact factor: 11.205

7.  Vertebrate Cryptochromes are Vestigial Flavoproteins.

Authors:  Roger J Kutta; Nataliya Archipowa; Linus O Johannissen; Alex R Jones; Nigel S Scrutton
Journal:  Sci Rep       Date:  2017-03-20       Impact factor: 4.379

8.  Zucchini Plants Alter Gene Expression and Emission of (E)-β-Caryophyllene Following Aphis gossypii Infestation.

Authors:  Alessia Vitiello; Donata Molisso; Maria Cristina Digilio; Massimo Giorgini; Giandomenico Corrado; Toby J A Bruce; Nunzio D'Agostino; Rosa Rao
Journal:  Front Plant Sci       Date:  2021-01-08       Impact factor: 5.753

9.  Mechanism Underlying the Shading-Induced Chlorophyll Accumulation in Tea Leaves.

Authors:  Jiaming Chen; Shuhua Wu; Fang Dong; Jianlong Li; Lanting Zeng; Jinchi Tang; Dachuan Gu
Journal:  Front Plant Sci       Date:  2021-12-02       Impact factor: 5.753

10.  Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR).

Authors:  Binuraj R K Menon; Samantha J O Hardman; Nigel S Scrutton; Derren J Heyes
Journal:  J Photochem Photobiol B       Date:  2016-06-01       Impact factor: 6.252

  10 in total

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