Literature DB >> 19431717

Conformation and orientation of gramicidin a in oriented phospholipid bilayers measured by solid state carbon-13 NMR.

B A Cornell, F Separovic, A J Baldassi, R Smith.   

Abstract

Three analogues of the helical ionophore gramicidin A have been synthesized with (13)C-labeled carbonyls ((13)C=O) incorporated at either Gly(2), Ala(3), or Val(7). A fourth compound incorporated (13)C at both the carbonyl and alpha-carbon of Gly(2) within the same molecule. These labels were studied using solid-state, proton-enhanced, (13)C nuclear magnetic resonance (NMR) in hydrated dispersions of dimyristoylphosphatidylcholine (DMPC)-gramicidin A. The dispersions were aligned on glass coverslips whose orientation to the magnetic field could be varied through 180 degrees . The orientation dependence of the NMR spectrum was used to obtain an accurate measurement of the (13)C chemical shift anisotropy (CSA), and in the case of the fourth compound, the (13)C-(13)C dipolar coupling constant. From the measured CSA and estimates of the orientation of the (13)C shielding tensor, we are able to determine the direction of the (13)C=O bonds and to compare these with the predictions of the various reported models for the configuration of gramicidin A in phospholipid bilayers. Our results are consistent with the left-handed pipi(6.3) (LD) single-stranded helix (Urry, D. W., J. T. Walker, and T. L. Trapane. 1982. J. Membr. Biol. 69:225-231). The right-handed pipi(6.3) (LD) single-stranded helix observed for gramicidin A in sodium dodecyl sulfate micelles (Arseniev, A. S., I. L. Barsukov, V. F. Bystrov, A. L. Loize, and Yu A. Ovchinnikov. 1985. FEBS (Fed. Eur. Biochem. Soc.) Lett. 186:168-174) yields a poorer fit to the data. However, the width of the carbonyl resonances suggests a distribution of molecular geometries possibly resulting from a spread in the helix pitch and handedness. Double-stranded helices and beta sheet structures are excluded. In dispersions in which the lipid is in the L(alpha) phase, the gramicidin A undergoes rapid reorientation about an axis which is centered on the normal to the plane of the coverslips. When the supporting lipid is in the L(beta') phase the helices are rigid on the timescale of (13)C-NMR. The configuration of gramicidin A is unaltered by L(alpha)-L(beta') phase transition of the bilayer lipid.

Entities:  

Year:  1988        PMID: 19431717      PMCID: PMC1330122          DOI: 10.1016/S0006-3495(88)83066-2

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  The dynamics of the intrinsic membrane polypeptide gramicidin a in phospholipid bilayers: a solid state carbon-13 NMR study.

Authors:  R Smith; B A Cornell
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

2.  Conformation of the gramicidin A channel in phospholipid vesicles: a fluorine-19 nuclear magnetic resonance study.

Authors:  S Weinstein; J T Durkin; W R Veatch; E R Blout
Journal:  Biochemistry       Date:  1985-07-30       Impact factor: 3.162

3.  Structure of gramicidin A.

Authors:  B A Wallace
Journal:  Biophys J       Date:  1986-01       Impact factor: 4.033

4.  Synthesis, characterization, and black lipid membrane studies of [7-L-alanine] gramicidin A.

Authors:  K U Prasad; S Alonso-Romanowski; C M Venkatachalam; T L Trapane; D W Urry
Journal:  Biochemistry       Date:  1986-01-28       Impact factor: 3.162

5.  Deuterium nuclear magnetic resonance investigation of the exchangeable sites on gramicidin A and gramicidin S in multilamellar vesicles of dipalmitoylphosphatidylcholine.

Authors:  K P Datema; K P Pauls; M Bloom
Journal:  Biochemistry       Date:  1986-07-01       Impact factor: 3.162

6.  1H-NMR study of gramicidin A transmembrane ion channel. Head-to-head right-handed, single-stranded helices.

Authors:  A S Arseniev; I L Barsukov; V F Bystrov; A L Lomize
Journal:  FEBS Lett       Date:  1985-07-08       Impact factor: 4.124

7.  Helical channels in crystals of gramicidin A and of a cesium--gramicidin A complex: an x-ray diffraction study.

Authors:  R E Koeppe; K O Hodgson; L Stryer
Journal:  J Mol Biol       Date:  1978-05-05       Impact factor: 5.469

8.  Importance of hydration for gramicidin-induced hexagonal HII phase formation in dioleoylphosphatidylcholine model membranes.

Authors:  J A Killian; B de Kruijff
Journal:  Biochemistry       Date:  1985-12-31       Impact factor: 3.162

9.  Comparative 2H- and 31P-NMR study on the properties of palmitoyllysophosphatidylcholine in bilayers with gramicidin, cholesterol and dipalmitoylphosphatidylcholine.

Authors:  J A Killian; F Borle; B de Kruijff; J Seelig
Journal:  Biochim Biophys Acta       Date:  1986-01-16

10.  Thermodynamic, motional, and structural aspects of gramicidin-induced hexagonal HII phase formation in phosphatidylethanolamine.

Authors:  J A Killian; B de Kruijff
Journal:  Biochemistry       Date:  1985-12-31       Impact factor: 3.162

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  38 in total

1.  Modulation of concentration fluctuations in phase-separated lipid membranes by polypeptide insertion.

Authors:  S Fahsel; E-M Pospiech; M Zein; T L Hazlet; E Gratton; Roland Winter
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

2.  Gramicidin channel selectivity. Molecular mechanics calculations for formamidinium, guanidinium, and acetamidinium.

Authors:  B Turano; M Pear; D Busath
Journal:  Biophys J       Date:  1992-07       Impact factor: 4.033

3.  United States--Australia workshop on membrane biophysics.

Authors:  D W Deamer; B Cornell
Journal:  Biophys J       Date:  1992-06       Impact factor: 4.033

4.  Optimizing and characterizing alignment of oriented lipid bilayers containing gramicidin D.

Authors:  F Moll; T A Cross
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

5.  Ion transport in a model gramicidin channel. Structure and thermodynamics.

Authors:  B Roux; M Karplus
Journal:  Biophys J       Date:  1991-05       Impact factor: 4.033

6.  Solid-state C NMR spectroscopy of a C carbonyl-labeled polypeptide.

Authors:  C Wang; Q Teng; T A Cross
Journal:  Biophys J       Date:  1992-06       Impact factor: 4.033

7.  Structural dynamics and topology of phosphorylated phospholamban homopentamer reveal its role in the regulation of calcium transport.

Authors:  Vitaly V Vostrikov; Kaustubh R Mote; Raffaello Verardi; Gianluigi Veglia
Journal:  Structure       Date:  2013-10-24       Impact factor: 5.006

8.  Modeling the membrane environment for membrane proteins.

Authors:  Frances Separovic; J Antoinette Killian; Myriam Cotten; David D Busath; Timothy A Cross
Journal:  Biophys J       Date:  2011-04-20       Impact factor: 4.033

9.  Geometry and intrinsic tilt of a tryptophan-anchored transmembrane alpha-helix determined by (2)H NMR.

Authors:  Patrick C A van der Wel; Erik Strandberg; J Antoinette Killian; Roger E Koeppe
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

10.  Resolution enhancement in solid-state NMR of oriented membrane proteins by anisotropic differential linebroadening.

Authors:  Thomas Vosegaard; Kresten Bertelsen; Jan M Pedersen; Lea Thøgersen; Birgit Schiøtt; Emad Tajkhorshid; Troels Skrydstrup; Niels Chr Nielsen
Journal:  J Am Chem Soc       Date:  2008-03-15       Impact factor: 15.419

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