Literature DB >> 19425580

Hydron transfer catalyzed by triosephosphate isomerase. Products of the direct and phosphite-activated isomerization of [1-(13)C]-glycolaldehyde in D(2)O.

Maybelle K Go1, Tina L Amyes, John P Richard.   

Abstract

Product distributions for the reaction of glycolaldehyde labeled with carbon-13 at the carbonyl carbon ([1-(13)C]-GA) catalyzed by triosephosphate isomerase (TIM) in D(2)O at pD 7.0 in the presence of phosphite dianion and in its absence were determined by (1)H NMR spectroscopy. We observe three products for the relatively fast phosphite-activated reaction (Amyes, T. L., and Richard, J. P. (2007) Biochemistry 46, 5841-5854): [2-(13)C]-GA from isomerization with intramolecular transfer of hydrogen (12% of products), [2-(13)C,2-(2)H]-GA from isomerization with incorporation of deuterium from D(2)O at C-2 (64% of products), and [1-(13)C,2-(2)H]-GA from incorporation of deuterium from D(2)O at C-2 (23% of products). The much slower unactivated reaction in the absence of phosphite results in formation of the same three products along with the doubly deuterated product [1-(13)C,2,2-(2)H(2)]-GA. The two isomerization products ([2-(13)C]-GA and [2-(13)C,2-(2)H]-GA) are formed in the same relative yields in both the unactivated and the phosphite-activated reactions. However, the additional [1-(13)C,2-(2)H]-GA and the doubly deuterated [1-(13)C,2,2-(2)H(2)]-GA formed in the unactivated TIM-catalyzed reaction are proposed to result from nonspecific reaction(s) at the protein surface. The data provide evidence that phosphite dianion affects the rate, but not the product distribution, of the TIM-catalyzed reaction of [1-(13)C]-GA at the enzyme active site. They are consistent with the conclusion that both reactions occur at an unstable loop-closed form of TIM and that activation of the isomerization reaction by phosphite dianion results from utilization of the intrinsic binding energy of phosphite dianion to stabilize the active loop-closed enzyme.

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Year:  2009        PMID: 19425580      PMCID: PMC2752442          DOI: 10.1021/bi900636c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  The importance of hinge sequence for loop function and catalytic activity in the reaction catalyzed by triosephosphate isomerase.

Authors:  J Xiang; J Sun; N S Sampson
Journal:  J Mol Biol       Date:  2001-04-06       Impact factor: 5.469

Review 2.  Binding energy, specificity, and enzymic catalysis: the circe effect.

Authors:  W P Jencks
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1975

3.  Optimal alignment for enzymatic proton transfer: structure of the Michaelis complex of triosephosphate isomerase at 1.2-A resolution.

Authors:  Gerwald Jogl; Sharon Rozovsky; Ann E McDermott; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-30       Impact factor: 11.205

4.  Free-energy profile of the reaction catalyzed by triosephosphate isomerase.

Authors:  W J Albery; J R Knowles
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

5.  pH-dependence of the triose phosphate isomerase reaction.

Authors:  B Plaut; J R Knowles
Journal:  Biochem J       Date:  1972-09       Impact factor: 3.857

6.  Formation and stability of enolates of acetamide and acetate anion: an Eigen plot for proton transfer at alpha-carbonyl carbon.

Authors:  John P Richard; Glenn Williams; AnnMarie C O'Donoghue; Tina L Amyes
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

7.  Entropy effects on protein hinges: the reaction catalyzed by triosephosphate isomerase.

Authors:  Jingyi Xiang; Ju-yeon Jung; Nicole S Sampson
Journal:  Biochemistry       Date:  2004-09-14       Impact factor: 3.162

8.  A substrate in pieces: allosteric activation of glycerol 3-phosphate dehydrogenase (NAD+) by phosphite dianion.

Authors:  Wing-Yin Tsang; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2008-04-01       Impact factor: 3.162

9.  Specificity and kinetics of triose phosphate isomerase from chicken muscle.

Authors:  S J Putman; A F Coulson; I R Farley; B Riddleston; J R Knowles
Journal:  Biochem J       Date:  1972-09       Impact factor: 3.857

10.  Understanding protein lids: structural analysis of active hinge mutants in triosephosphate isomerase.

Authors:  I Kursula; M Salin; J Sun; B V Norledge; A M Haapalainen; N S Sampson; R K Wierenga
Journal:  Protein Eng Des Sel       Date:  2004-05-27       Impact factor: 1.650

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  46 in total

1.  Mechanism for activation of triosephosphate isomerase by phosphite dianion: the role of a ligand-driven conformational change.

Authors:  M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2011-09-28       Impact factor: 15.419

2.  A paradigm for enzyme-catalyzed proton transfer at carbon: triosephosphate isomerase.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2012-03-20       Impact factor: 3.162

3.  Role of Lys-12 in catalysis by triosephosphate isomerase: a two-part substrate approach.

Authors:  Maybelle K Go; Astrid Koudelka; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-06-29       Impact factor: 3.162

4.  OMP decarboxylase: phosphodianion binding energy is used to stabilize a vinyl carbanion intermediate.

Authors:  Bogdana Goryanova; Tina L Amyes; John A Gerlt; John P Richard
Journal:  J Am Chem Soc       Date:  2011-04-12       Impact factor: 15.419

5.  Conformational changes in orotidine 5'-monophosphate decarboxylase: "remote" residues that stabilize the active conformation.

Authors:  B McKay Wood; Tina L Amyes; Alexander A Fedorov; Elena V Fedorov; Andrew Shabila; Steven C Almo; John P Richard; John A Gerlt
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

6.  Bovine serum albumin-catalyzed deprotonation of [1-(13)C]glycolaldehyde: protein reactivity toward deprotonation of the alpha-hydroxy alpha-carbonyl carbon.

Authors:  Maybelle K Go; M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2010-09-07       Impact factor: 3.162

7.  Role of a guanidinium cation-phosphodianion pair in stabilizing the vinyl carbanion intermediate of orotidine 5'-phosphate decarboxylase-catalyzed reactions.

Authors:  Bogdana Goryanova; Lawrence M Goldman; Tina L Amyes; John A Gerlt; John P Richard
Journal:  Biochemistry       Date:  2013-10-08       Impact factor: 3.162

Review 8.  A reevaluation of the origin of the rate acceleration for enzyme-catalyzed hydride transfer.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Org Biomol Chem       Date:  2017-10-31       Impact factor: 3.876

9.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

10.  Clusters of branched aliphatic side chains serve as cores of stability in the native state of the HisF TIM barrel protein.

Authors:  Basavanapura N Gangadhara; Jennifer M Laine; Sagar V Kathuria; Francesca Massi; C Robert Matthews
Journal:  J Mol Biol       Date:  2013-01-16       Impact factor: 5.469

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