Literature DB >> 28956050

A reevaluation of the origin of the rate acceleration for enzyme-catalyzed hydride transfer.

Archie C Reyes1, Tina L Amyes, John P Richard.   

Abstract

There is no consensus of opinion on the origin of the large rate accelerations observed for enzyme-catalyzed hydride transfer. The interpretation of recent results from studies on hydride transfer reactions catalyzed by alcohol dehydrogenase (ADH) focus on the proposal that the effective barrier height is reduced by quantum-mechanical tunneling through the energy barrier. This interpretation contrasts sharply with the notion that enzymatic rate accelerations are obtained through direct stabilization of the transition state for the nonenzymatic reaction in water. The binding energy of the dianion of substrate DHAP provides 11 kcal mol-1 stabilization of the transition state for the hydride transfer reaction catalyzed by glycerol-3-phosphate dehydrogenase (GPDH). We summarize evidence that the binding interactions between (GPDH) and dianion activators are utilized directly for stabilization of the transition state for enzyme-catalyzed hydride transfer. The possibility is considered, and then discounted, that these dianion binding interactions are utilized for the stabilization of a tunnel ready state (TRS) that enables efficient tunneling of the transferred hydride through the energy barrier, and underneath the energy maximum for the transition state. It is noted that the evidence to support the existence of a tunnel-ready state for the hydride transfer reactions catalyzed by ADH is ambiguous. We propose that the rate acceleration for ADH is due to the utilization of the binding energy of the cofactor NAD+/NADH in the stabilization of the transition state for enzyme-catalyzed hydride transfer.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28956050      PMCID: PMC5664202          DOI: 10.1039/c7ob01652b

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  80 in total

1.  The crystal structure and mechanism of orotidine 5'-monophosphate decarboxylase.

Authors:  T C Appleby; C Kinsland; T P Begley; S E Ealick
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-29       Impact factor: 11.205

2.  Contribution of phosphate intrinsic binding energy to the enzymatic rate acceleration for triosephosphate isomerase.

Authors:  T L Amyes; A C O'Donoghue; J P Richard
Journal:  J Am Chem Soc       Date:  2001-11-14       Impact factor: 15.419

Review 3.  Binding energy, specificity, and enzymic catalysis: the circe effect.

Authors:  W P Jencks
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  1975

4.  Orotidine 5'-monophosphate decarboxylase: transition state stabilization from remote protein-phosphodianion interactions.

Authors:  Tina L Amyes; Shonoi A Ming; Lawrence M Goldman; B McKay Wood; Bijoy J Desai; John A Gerlt; John P Richard
Journal:  Biochemistry       Date:  2012-05-31       Impact factor: 3.162

Review 5.  Relating protein motion to catalysis.

Authors:  Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Annu Rev Biochem       Date:  2006       Impact factor: 23.643

6.  A variety of electrostatic interactions and adducts can activate NAD(P) cofactors for hydride transfer.

Authors:  Rob Meijers; Eila Cedergren-Zeppezauer
Journal:  Chem Biol Interact       Date:  2008-11-05       Impact factor: 5.192

7.  Hydride transfer in liver alcohol dehydrogenase: quantum dynamics, kinetic isotope effects, and role of enzyme motion.

Authors:  S R Billeter; S P Webb; P K Agarwal; T Iordanov; S Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2001-11-14       Impact factor: 15.419

8.  Activation of R235A mutant orotidine 5'-monophosphate decarboxylase by the guanidinium cation: effective molarity of the cationic side chain of Arg-235.

Authors:  Shonoi A Barnett; Tina L Amyes; B McKay Wood; John A Gerlt; John P Richard
Journal:  Biochemistry       Date:  2010-02-09       Impact factor: 3.162

9.  A substrate in pieces: allosteric activation of glycerol 3-phosphate dehydrogenase (NAD+) by phosphite dianion.

Authors:  Wing-Yin Tsang; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2008-04-01       Impact factor: 3.162

10.  The activating oxydianion binding domain for enzyme-catalyzed proton transfer, hydride transfer, and decarboxylation: specificity and enzyme architecture.

Authors:  Archie C Reyes; Xiang Zhai; Kelsey T Morgan; Christopher J Reinhardt; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2015-01-20       Impact factor: 15.419

View more
  4 in total

1.  Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies.

Authors:  Lisa S Mydy; Judith R Cristobal; Roberto D Katigbak; Paul Bauer; Archie C Reyes; Shina Caroline Lynn Kamerlin; John P Richard; Andrew M Gulick
Journal:  Biochemistry       Date:  2019-01-31       Impact factor: 3.162

2.  Primary Deuterium Kinetic Isotope Effects: A Probe for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed by Glycerol-3-Phosphate Dehydrogenase.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2018-07-10       Impact factor: 3.162

3.  Loss of Hyperconjugative Effects Drives Hydride Transfer during Dihydrofolate Reductase Catalysis.

Authors:  Antonio Angelastro; J Javier Ruiz-Pernía; Iñaki Tuñón; Vicent Moliner; Louis Y P Luk; Rudolf K Allemann
Journal:  ACS Catal       Date:  2019-09-23       Impact factor: 13.084

4.  Protein Flexibility and Stiffness Enable Efficient Enzymatic Catalysis.

Authors:  John P Richard
Journal:  J Am Chem Soc       Date:  2019-02-14       Impact factor: 15.419

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.