Literature DB >> 20687575

Bovine serum albumin-catalyzed deprotonation of [1-(13)C]glycolaldehyde: protein reactivity toward deprotonation of the alpha-hydroxy alpha-carbonyl carbon.

Maybelle K Go1, M Merced Malabanan, Tina L Amyes, John P Richard.   

Abstract

Bovine serum albumin (BSA) in D(2)O at 25 degrees C and pD 7.0 was found to catalyze the deuterium exchange reactions of [1-(13)C]glycolaldehyde ([1-(13)C]GA) to form [1-(13)C,2-(2)H]GA and [1-(13)C,2,2-di-(2)H]GA. The formation of [1-(13)C,2-(2)H]GA and [1-(13)C,2,2-di-(2)H]GA in a total yield of 51 +/- 3% was observed at early reaction times, and at later times, [1-(13)C,2-(2)H]GA was found to undergo BSA-catalyzed conversion to [1-(13)C,2,2-di-(2)H]GA. The overall second-order rate constant for these deuterium exchange reactions [(k(E))(P)] equals 0.25 M(-1) s(-1). By comparison, (k(E))(P) values of 0.04 M(-1) s(-1) [Go, M. K., Amyes, T. L., and Richard, J. P. (2009) Biochemistry 48, 5769-5778] and 0.06 M(-1) s(-1) [Go, M. K., Koudelka, A., Amyes, T. L., and Richard, J. P. (2010) Biochemistry 49, 5377-5389] have been determined for the wild-type- and K12G mutant TIM-catalyzed deuterium exchange reactions of [1-(13)C]GA, respectively, to form [1-(13)C,2,2-di-(2)H]GA. These data show that TIM and BSA exhibit a modest catalytic activity toward deprotonation of the alpha-hydroxy alpha-carbonyl carbon. We suggest that this activity is intrinsic to many globular proteins, and that it must be enhanced to demonstrate meaningful de novo design of protein catalysts of proton transfer at alpha-carbonyl carbon.

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Year:  2010        PMID: 20687575      PMCID: PMC2932853          DOI: 10.1021/bi101118g

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

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Journal:  Nature       Date:  1992-07-16       Impact factor: 49.962

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Authors:  Fujie Tanaka; Roberta Fuller; Carlos F Barbas
Journal:  Biochemistry       Date:  2005-05-24       Impact factor: 3.162

4.  Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of (R)-glyceraldehyde 3-phosphate in D2O.

Authors:  Annmarie C O'Donoghue; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2005-02-22       Impact factor: 3.162

5.  Hydron transfer catalyzed by triosephosphate isomerase. Products of isomerization of dihydroxyacetone phosphate in D2O.

Authors:  Annmarie C O'Donoghue; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2005-02-22       Impact factor: 3.162

6.  The uncatalyzed rates of enolization of dihydroxyacetone phoshate and of glyceraldehyde 3-phosphate in neutral aqueous solution. The quantitative assessment of the effectiveness of an enzyme catalyst.

Authors:  A Hall; J R Knowles
Journal:  Biochemistry       Date:  1975-09-23       Impact factor: 3.162

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Journal:  Protein Sci       Date:  1995-11       Impact factor: 6.725

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Journal:  J Biol Chem       Date:  1995-04-28       Impact factor: 5.157

9.  Enzymatic catalysis of proton transfer at carbon: activation of triosephosphate isomerase by phosphite dianion.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

10.  Reaction energetics of a mutant triosephosphate isomerase in which the active-site glutamate has been changed to aspartate.

Authors:  R T Raines; E L Sutton; D R Straus; W Gilbert; J R Knowles
Journal:  Biochemistry       Date:  1986-11-04       Impact factor: 3.162

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  9 in total

1.  Structural mutations that probe the interactions between the catalytic and dianion activation sites of triosephosphate isomerase.

Authors:  Xiang Zhai; Tina L Amyes; Rik K Wierenga; J Patrick Loria; John P Richard
Journal:  Biochemistry       Date:  2013-08-16       Impact factor: 3.162

2.  Wildtype and engineered monomeric triosephosphate isomerase from Trypanosoma brucei: partitioning of reaction intermediates in D2O and activation by phosphite dianion.

Authors:  M Merced Malabanan; Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

3.  Binding energy and catalysis by D-xylose isomerase: kinetic, product, and X-ray crystallographic analysis of enzyme-catalyzed isomerization of (R)-glyceraldehyde.

Authors:  Maria M Toteva; Nicholas R Silvaggi; Karen N Allen; John P Richard
Journal:  Biochemistry       Date:  2011-10-27       Impact factor: 3.162

4.  Enzymatic Catalysis of Proton Transfer and Decarboxylation Reactions.

Authors:  John P Richard
Journal:  Pure Appl Chem       Date:  2011-07-08       Impact factor: 2.453

5.  Mechanism for activation of triosephosphate isomerase by phosphite dianion: the role of a hydrophobic clamp.

Authors:  M Merced Malabanan; Astrid P Koudelka; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2012-06-06       Impact factor: 15.419

6.  Enzyme architecture: remarkably similar transition states for triosephosphate isomerase-catalyzed reactions of the whole substrate and the substrate in pieces.

Authors:  Xiang Zhai; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2014-03-06       Impact factor: 15.419

7.  Enzyme architecture: the effect of replacement and deletion mutations of loop 6 on catalysis by triosephosphate isomerase.

Authors:  Xiang Zhai; Maybelle K Go; AnnMarie C O'Donoghue; Tina L Amyes; Scott D Pegan; Yan Wang; J Patrick Loria; Andrew D Mesecar; John P Richard
Journal:  Biochemistry       Date:  2014-05-22       Impact factor: 3.162

8.  Role of Loop-Clamping Side Chains in Catalysis by Triosephosphate Isomerase.

Authors:  Xiang Zhai; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2015-11-30       Impact factor: 15.419

9.  Structure-Function Studies of Hydrophobic Residues That Clamp a Basic Glutamate Side Chain during Catalysis by Triosephosphate Isomerase.

Authors:  John P Richard; Tina L Amyes; M Merced Malabanan; Xiang Zhai; Kalvin J Kim; Christopher J Reinhardt; Rik K Wierenga; Eric J Drake; Andrew M Gulick
Journal:  Biochemistry       Date:  2016-05-17       Impact factor: 3.162

  9 in total

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