Literature DB >> 19416923

Self-organization in the genome.

Tom Misteli1.   

Abstract

Mesh：

Year:  2009        PMID： 19416923      PMCID： PMC2678480          DOI： 10.1073/pnas.0902010106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  13 in total

1.  Single-cell gene expression profiling.

Authors:  Jeffrey M Levsky; Shailesh M Shenoy; Rossanna C Pezo; Robert H Singer
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

2.  Nucleolar clustering of dispersed tRNA genes.

Authors:  Martin Thompson; Rebecca A Haeusler; Paul D Good; David R Engelke
Journal:  Science       Date:  2003-11-21       Impact factor: 47.728

Review 3.  Form follows function: The genomic organization of cellular differentiation.

Authors:  Steven T Kosak; Mark Groudine
Journal:  Genes Dev       Date:  2004-06-15       Impact factor: 11.361

Review 4.  Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.

Authors:  Christian Lanctôt; Thierry Cheutin; Marion Cremer; Giacomo Cavalli; Thomas Cremer
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

Review 5.  Beyond the sequence: cellular organization of genome function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

6.  Virus Infection Induces NF-kappaB-dependent interchromosomal associations mediating monoallelic IFN-beta gene expression.

Authors:  Effie Apostolou; Dimitris Thanos
Journal:  Cell       Date:  2008-07-11       Impact factor: 41.582

7.  The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.

Authors:  Indika Rajapakse; Michael D Perlman; David Scalzo; Charles Kooperberg; Mark Groudine; Steven T Kosak
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-10       Impact factor: 11.205

8.  Active genes dynamically colocalize to shared sites of ongoing transcription.

Authors:  Cameron S Osborne; Lyubomira Chakalova; Karen E Brown; David Carter; Alice Horton; Emmanuel Debrand; Beatriz Goyenechea; Jennifer A Mitchell; Susana Lopes; Wolf Reik; Peter Fraser
Journal:  Nat Genet       Date:  2004-09-07       Impact factor: 38.330

Review 9.  The concept of self-organization in cellular architecture.

Authors:  T Misteli
Journal:  J Cell Biol       Date:  2001-10-15       Impact factor: 10.539

10.  Coordinate gene regulation during hematopoiesis is related to genomic organization.

Authors:  Steven T Kosak; David Scalzo; Sam V Alworth; Fusheng Li; Stephanie Palmer; Tariq Enver; James S J Lee; Mark Groudine
Journal:  PLoS Biol       Date:  2007-11       Impact factor: 8.029
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  27 in total

Review 1.  The nucleus introduced.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-05-01       Impact factor: 10.005

2.  Dynamics and control of state-dependent networks for probing genomic organization.

Authors:  Indika Rajapakse; Mark Groudine; Mehran Mesbahi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-12       Impact factor: 11.205

3.  Transcriptional control by G-quadruplexes: In vivo roles and perspectives for specific intervention.

Authors:  Pablo Armas; Aldana David; Nora B Calcaterra
Journal:  Transcription       Date:  2016-10-03

4.  Dynamic chromatin accessibility modeled by Markov process of randomly-moving molecules in the 3D genome.

Authors:  Yinan Wang; Caoqi Fan; Yuxuan Zheng; Cheng Li
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

5.  Interphase chromatin organisation in Arabidopsis nuclei: constraints versus randomness.

Authors:  Veit Schubert; Alexandre Berr; Armin Meister
Journal:  Chromosoma       Date:  2012-04-04       Impact factor: 4.316

6.  ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing.

Authors:  Xingqi Chen; Ying Shen; Will Draper; Jason D Buenrostro; Ulrike Litzenburger; Seung Woo Cho; Ansuman T Satpathy; Ava C Carter; Rajarshi P Ghosh; Alexandra East-Seletsky; Jennifer A Doudna; William J Greenleaf; Jan T Liphardt; Howard Y Chang
Journal:  Nat Methods       Date:  2016-10-17       Impact factor: 28.547

Review 7.  A Crowdsourced nucleus: understanding nuclear organization in terms of dynamically networked protein function.

Authors:  Ashley M Wood; Arturo G Garza-Gongora; Steven T Kosak
Journal:  Biochim Biophys Acta       Date:  2014-01-09

Review 8.  The 3D genome in transcriptional regulation and pluripotency.

Authors:  David U Gorkin; Danny Leung; Bing Ren
Journal:  Cell Stem Cell       Date:  2014-06-05       Impact factor: 24.633

9.  The elastin peptide (VGVAPG)3 induces the 3D reorganisation of PML-NBs and SC35 speckles architecture, and accelerates proliferation of fibroblasts and melanoma cells.

Authors:  Aurore Chatron-Colliet; Nathalie Lalun; Christine Terryn; Sandrine Kurdykowski; Marianne Lorenzato; Anthony Rusciani; Dominique Ploton; Laurent Duca; Hélène Bobichon
Journal:  Histochem Cell Biol       Date:  2014-10-02       Impact factor: 4.304

10.  Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.

Authors:  Reza Kalhor; Harianto Tjong; Nimanthi Jayathilaka; Frank Alber; Lin Chen
Journal:  Nat Biotechnol       Date:  2011-12-25       Impact factor: 54.908
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