Literature DB >> 24412853

A Crowdsourced nucleus: understanding nuclear organization in terms of dynamically networked protein function.

Ashley M Wood1, Arturo G Garza-Gongora1, Steven T Kosak2.   

Abstract

The spatial organization of the nucleus results in a compartmentalized structure that affects all aspects of nuclear function. This compartmentalization involves genome organization as well as the formation of nuclear bodies and plays a role in many functions, including gene regulation, genome stability, replication, and RNA processing. Here we review the recent findings associated with the spatial organization of the nucleus and reveal that a common theme for nuclear proteins is their ability to participate in a variety of functions and pathways. We consider this multiplicity of function in terms of Crowdsourcing, a recent phenomenon in the world of information technology, and suggest that this model provides a novel way to synthesize the many intersections between nuclear organization and function. This article is part of a Special Issue entitled: Chromatin and epigenetic regulation of animal development.
Copyright © 2014 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Genome organization; Nuclear body; Nuclear organization

Mesh:

Year:  2014        PMID: 24412853      PMCID: PMC3954575          DOI: 10.1016/j.bbagrm.2014.01.003

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  209 in total

1.  Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development.

Authors:  Steven T Kosak; Jane A Skok; Kay L Medina; Roy Riblet; Michelle M Le Beau; Amanda G Fisher; Harinder Singh
Journal:  Science       Date:  2002-04-05       Impact factor: 47.728

2.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

3.  Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA.

Authors:  Timothy E Audas; Mathieu D Jacob; Stephen Lee
Journal:  Mol Cell       Date:  2012-01-27       Impact factor: 17.970

4.  Chromatin mobility is increased at sites of DNA double-strand breaks.

Authors:  P M Krawczyk; T Borovski; J Stap; T Cijsouw; R ten Cate; J P Medema; R Kanaar; N A P Franken; J A Aten
Journal:  J Cell Sci       Date:  2012-02-10       Impact factor: 5.285

5.  A role for CTCF and cohesin in subtelomere chromatin organization, TERRA transcription, and telomere end protection.

Authors:  Zhong Deng; Zhuo Wang; Nick Stong; Robert Plasschaert; Aliah Moczan; Horng-Shen Chen; Sufeng Hu; Priyankara Wikramasinghe; Ramana V Davuluri; Marisa S Bartolomei; Harold Riethman; Paul M Lieberman
Journal:  EMBO J       Date:  2012-09-25       Impact factor: 11.598

6.  Structural and functional roles of Daxx SIM phosphorylation in SUMO paralog-selective binding and apoptosis modulation.

Authors:  Che-Chang Chang; Mandar T Naik; Yen-Sung Huang; Jen-Chong Jeng; Pei-Hsin Liao; Hong-Yi Kuo; Chun-Chen Ho; Yung-Lin Hsieh; Chiou-Hong Lin; Nai-Jia Huang; Nandita M Naik; Camy C-H Kung; Shu-Yu Lin; Ruey-Hwa Chen; Kun-Sang Chang; Tai-Huang Huang; Hsiu-Ming Shih
Journal:  Mol Cell       Date:  2011-04-08       Impact factor: 17.970

7.  Chromatin-bound nuclear pore components regulate gene expression in higher eukaryotes.

Authors:  Maya Capelson; Yun Liang; Roberta Schulte; William Mair; Ulrich Wagner; Martin W Hetzer
Journal:  Cell       Date:  2010-02-05       Impact factor: 41.582

8.  Developmentally regulated subnuclear genome reorganization restricts neural progenitor competence in Drosophila.

Authors:  Minoree Kohwi; Joshua R Lupton; Sen-Lin Lai; Michael R Miller; Chris Q Doe
Journal:  Cell       Date:  2013-01-17       Impact factor: 41.582

9.  Spatial dynamics of chromosome translocations in living cells.

Authors:  Vassilis Roukos; Ty C Voss; Christine K Schmidt; Seungtaek Lee; Darawalee Wangsa; Tom Misteli
Journal:  Science       Date:  2013-08-09       Impact factor: 47.728

10.  Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription.

Authors:  Robert-Jan Palstra; Marieke Simonis; Petra Klous; Emilie Brasset; Bart Eijkelkamp; Wouter de Laat
Journal:  PLoS One       Date:  2008-02-20       Impact factor: 3.240

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  1 in total

1.  Topologically associated domains enriched for lineage-specific genes reveal expression-dependent nuclear topologies during myogenesis.

Authors:  Daniel S Neems; Arturo G Garza-Gongora; Erica D Smith; Steven T Kosak
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

  1 in total

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