Literature DB >> 19416830

Darwinian biophysics: electrostatics and evolution in the kinetics of molecular binding.

J Andrew McCammon1.   

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Year:  2009        PMID： 19416830      PMCID： PMC2683110          DOI： 10.1073/pnas.0902767106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  9 in total

1.  Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin.

Authors:  A H Elcock; R R Gabdoulline; R C Wade; J A McCammon
Journal:  J Mol Biol       Date:  1999-08-06       Impact factor: 5.469

2.  Thermodynamics and kinetics of actin filament nucleation.

Authors:  D Sept; J A McCammon
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

Review 3.  Biomolecular diffusional association.

Authors:  Razif R Gabdoulline; Rebecca C Wade
Journal:  Curr Opin Struct Biol       Date:  2002-04       Impact factor: 6.809

4.  Electrostatic rate enhancement and transient complex of protein-protein association.

Authors:  Ramzi Alsallaq; Huan-Xiang Zhou
Journal:  Proteins       Date:  2008-04

5.  Dissection of the high rate constant for the binding of a ribotoxin to the ribosome.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-03       Impact factor: 11.205

Review 6.  Mathematical models and simulations of cellular processes based on actin filaments.

Authors:  Thomas D Pollard; Julien Berro
Journal:  J Biol Chem       Date:  2008-10-20       Impact factor: 5.157

7.  Enhancement of protein-protein association rate by interaction potential: accuracy of prediction based on local Boltzmann factor.

Authors:  H X Zhou
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

8.  Brownian dynamics study of the influences of electrostatic interaction and diffusion on protein-protein association kinetics.

Authors:  H X Zhou
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

9.  Electrostatic influence on the kinetics of ligand binding to acetylcholinesterase. Distinctions between active center ligands and fasciculin.

Authors:  Z Radić; P D Kirchhoff; D M Quinn; J A McCammon; P Taylor
Journal:  J Biol Chem       Date:  1997-09-12       Impact factor: 5.157
  9 in total
  18 in total

1.  AESOP: A Python Library for Investigating Electrostatics in Protein Interactions.

Authors:  Reed E S Harrison; Rohith R Mohan; Ronald D Gorham; Chris A Kieslich; Dimitrios Morikis
Journal:  Biophys J       Date:  2017-05-09       Impact factor: 4.033

Review 2.  On the role of electrostatics in protein-protein interactions.

Authors:  Zhe Zhang; Shawn Witham; Emil Alexov
Journal:  Phys Biol       Date:  2011-05-13       Impact factor: 2.583

3.  Short solvent model for ion correlations and hydrophobic association.

Authors:  Ang Gao; Richard C Remsing; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-07       Impact factor: 11.205

4.  DelPhiForce, a tool for electrostatic force calculations: Applications to macromolecular binding.

Authors:  Lin Li; Arghya Chakravorty; Emil Alexov
Journal:  J Comput Chem       Date:  2017-01-28       Impact factor: 3.376

5.  Mean-field description of ionic size effects with nonuniform ionic sizes: a numerical approach.

Authors:  Shenggao Zhou; Zhongming Wang; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-08-01

6.  MEAN-FIELD THEORY AND COMPUTATION OF ELECTROSTATICS WITH IONIC CONCENTRATION DEPENDENT DIELECTRICS.

Authors:  B O Li; Jiayi Wen; Shenggao Zhou
Journal:  Commun Math Sci       Date:  2016       Impact factor: 1.120

7.  Competitive adsorption and ordered packing of counterions near highly charged surfaces: From mean-field theory to Monte Carlo simulations.

Authors:  Jiayi Wen; Shenggao Zhou; Zhenli Xu; Bo Li
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2012-04-26

8.  Molecular mechanism of the enhanced virulence of 2009 pandemic influenza A (H1N1) virus from D222G mutation in the hemagglutinin: a molecular modeling study.

Authors:  Dabo Pan; Weihua Xue; Xiaoting Wang; Jingjing Guo; Huanxiang Liu; Xiaojun Yao
Journal:  J Mol Model       Date:  2012-05-13       Impact factor: 1.810

9.  Coupling Monte Carlo, Variational Implicit Solvation, and Binary Level-Set for Simulations of Biomolecular Binding.

Authors:  Zirui Zhang; Clarisse G Ricci; Chao Fan; Li-Tien Cheng; Bo Li; J Andrew McCammon
Journal:  J Chem Theory Comput       Date:  2021-03-02       Impact factor: 6.006

10.  Mechanism of glycan receptor recognition and specificity switch for avian, swine, and human adapted influenza virus hemagglutinins: a molecular dynamics perspective.

Authors:  E Irene Newhouse; Dong Xu; Phineus R L Markwick; Rommie E Amaro; Hsing C Pao; Kevin J Wu; Maqsudul Alam; J Andrew McCammon; Wilfred W Li
Journal:  J Am Chem Soc       Date:  2009-12-02       Impact factor: 15.419
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