Literature DB >> 31911472

Short solvent model for ion correlations and hydrophobic association.

Ang Gao1,2,3,4, Richard C Remsing5, John D Weeks6,2,3.   

Abstract

Coulomb interactions play a major role in determining the thermodynamics, structure, and dynamics of condensed-phase systems, but often present significant challenges. Computer simulations usually use periodic boundary conditions to minimize corrections from finite cell boundaries but the long range of the Coulomb interactions generates significant contributions from distant periodic images of the simulation cell, usually calculated by Ewald sum techniques. This can add significant overhead to computer simulations and hampers the development of intuitive local pictures and simple analytic theory. In this paper, we present a general framework based on local molecular field theory to accurately determine the contributions from long-ranged Coulomb interactions to the potential of mean force between ionic or apolar hydrophobic solutes in dilute aqueous solutions described by standard classical point charge water models. The simplest approximation leads to a short solvent (SS) model, with truncated solvent-solvent and solute-solvent Coulomb interactions and long-ranged but screened Coulomb interactions only between charged solutes. The SS model accurately describes the interplay between strong short-ranged solute core interactions, local hydrogen-bond configurations, and long-ranged dielectric screening of distant charges, competing effects that are difficult to capture in standard implicit solvent models.

Entities:  

Keywords:  Coulomb interactions; hydrophobic hydration and association; implicit solvent model; ion correlations

Year:  2020        PMID: 31911472      PMCID: PMC6983419          DOI: 10.1073/pnas.1918981117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  59 in total

1.  Free energy calculations for theophylline binding to an RNA aptamer: Comparison of MM-PBSA and thermodynamic integration methods.

Authors:  Hiroaki Gouda; Irwin D Kuntz; David A Case; Peter A Kollman
Journal:  Biopolymers       Date:  2003-01       Impact factor: 2.505

2.  Theory of binless multi-state free energy estimation with applications to protein-ligand binding.

Authors:  Zhiqiang Tan; Emilio Gallicchio; Mauro Lapelosa; Ronald M Levy
Journal:  J Chem Phys       Date:  2012-04-14       Impact factor: 3.488

3.  Interfacial free energy and the hydrophobic effect.

Authors:  C Tanford
Journal:  Proc Natl Acad Sci U S A       Date:  1979-09       Impact factor: 11.205

4.  The effect of electrostatic boundaries in molecular simulations: symmetry matters.

Authors:  Cong Pan; Shasha Yi; Zhonghan Hu
Journal:  Phys Chem Chem Phys       Date:  2017-02-08       Impact factor: 3.676

5.  Ab initio thermodynamics of liquid and solid water.

Authors:  Bingqing Cheng; Edgar A Engel; Jörg Behler; Christoph Dellago; Michele Ceriotti
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-04       Impact factor: 11.205

6.  Long-ranged contributions to solvation free energies from theory and short-ranged models.

Authors:  Richard C Remsing; Shule Liu; John D Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

7.  Molecular-level origin of the carboxylate head group response to divalent metal ion complexation at the air-water interface.

Authors:  Joanna K Denton; Patrick J Kelleher; Mark A Johnson; Marcel D Baer; Shawn M Kathmann; Christopher J Mundy; Bethany A Wellen Rudd; Heather C Allen; Tae Hoon Choi; Kenneth D Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-05       Impact factor: 11.205

8.  Force fields for divalent cations based on single-ion and ion-pair properties.

Authors:  Shavkat Mamatkulov; Maria Fyta; Roland R Netz
Journal:  J Chem Phys       Date:  2013-01-14       Impact factor: 3.488

9.  Ultrasensitivity of Water Exchange Kinetics to the Size of Metal Ion.

Authors:  Yuno Lee; D Thirumalai; Changbong Hyeon
Journal:  J Am Chem Soc       Date:  2017-09-01       Impact factor: 15.419

10.  Metal ion dependence of cooperative collapse transitions in RNA.

Authors:  Sarvin Moghaddam; Gokhan Caliskan; Seema Chauhan; Changbong Hyeon; R M Briber; D Thirumalai; Sarah A Woodson
Journal:  J Mol Biol       Date:  2009-08-25       Impact factor: 5.469

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  5 in total

1.  Dielectric response with short-ranged electrostatics.

Authors:  Stephen J Cox
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

2.  Solvation Thermodynamics from the Perspective of Endpoints DFT.

Authors:  Ronald M Levy; Nobuyuki Matubayasi; Bin W Zhang
Journal:  J Phys Chem B       Date:  2020-12-11       Impact factor: 2.991

3.  Size and charge correlations in spherical electric double layers: a case study with fully asymmetric mixed electrolytes within the solvent primitive model.

Authors:  Chandra N Patra
Journal:  RSC Adv       Date:  2020-10-23       Impact factor: 4.036

4.  A molecular twist on hydrophobicity.

Authors:  Sara Gómez; Natalia Rojas-Valencia; Santiago A Gómez; Chiara Cappelli; Gabriel Merino; Albeiro Restrepo
Journal:  Chem Sci       Date:  2021-06-15       Impact factor: 9.825

5.  Self-consistent determination of long-range electrostatics in neural network potentials.

Authors:  Ang Gao; Richard C Remsing
Journal:  Nat Commun       Date:  2022-03-23       Impact factor: 14.919

  5 in total

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