Literature DB >> 21572182

On the role of electrostatics in protein-protein interactions.

Zhe Zhang1, Shawn Witham, Emil Alexov.   

Abstract

The role of electrostatics in protein-protein interactions and binding is reviewed in this paper. A brief outline of the computational modeling, in the framework of continuum electrostatics, is presented and the basic electrostatic effects occurring upon the formation of the complex are discussed. The effect of the salt concentration and pH of the water phase on protein-protein binding free energy is demonstrated which indicates that the increase of the salt concentration tends to weaken the binding, an observation that is attributed to the optimization of the charge-charge interactions across the interface. It is pointed out that the pH-optimum (pH of optimal binding affinity) varies among the protein-protein complexes, and perhaps is a result of their adaptation to particular subcellular compartments. The similarities and differences between hetero- and homo-complexes are outlined and discussed with respect to the binding mode and charge complementarity.

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Year:  2011        PMID: 21572182      PMCID: PMC3137121          DOI: 10.1088/1478-3975/8/3/035001

Source DB:  PubMed          Journal:  Phys Biol        ISSN: 1478-3967            Impact factor:   2.583


  133 in total

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2.  Predicting 3D structures of transient protein-protein complexes by homology.

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10.  pH-sensitive binding of cytochrome c to the inner mitochondrial membrane. Implications for the participation of the protein in cell respiration and apoptosis.

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  43 in total

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9.  Electrostatic component of binding energy: Interpreting predictions from poisson-boltzmann equation and modeling protocols.

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Review 10.  The role of protonation states in ligand-receptor recognition and binding.

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