Literature DB >> 19404470

Kinetic proofreading of gene activation by chromatin remodeling.

R Blossey, H Schiessel.   

Abstract

Gene activation in eukaryotes involves the concerted action of histone tail modifiers, chromatin remodelers, and transcription factors, whose precise coordination is currently unknown. We demonstrate that the experimentally observed interactions of the molecules are in accord with a kinetic proofreading scheme. Our finding could provide a basis for the development of quantitative models for gene regulation in eukaryotes based on the combinatorical interactions of chromatin modifiers.

Year:  2008        PMID: 19404470      PMCID: PMC2645567          DOI: 10.2976/1.2909080

Source DB:  PubMed          Journal:  HFSP J        ISSN: 1955-205X


  13 in total

1.  The language of covalent histone modifications.

Authors:  B D Strahl; C D Allis
Journal:  Nature       Date:  2000-01-06       Impact factor: 49.962

2.  Chromatin remodeling by RSC involves ATP-dependent DNA translocation.

Authors:  Anjanabha Saha; Jacqueline Wittmeyer; Bradley R Cairns
Journal:  Genes Dev       Date:  2002-08-15       Impact factor: 11.361

Review 3.  Signaling network model of chromatin.

Authors:  Stuart L Schreiber; Bradley E Bernstein
Journal:  Cell       Date:  2002-12-13       Impact factor: 41.582

Review 4.  Molecular biology. Chromatin higher order folding--wrapping up transcription.

Authors:  Peter J Horn; Craig L Peterson
Journal:  Science       Date:  2002-09-13       Impact factor: 47.728

Review 5.  Regulated nucleosome mobility and the histone code.

Authors:  Michael S Cosgrove; Jef D Boeke; Cynthia Wolberger
Journal:  Nat Struct Mol Biol       Date:  2004-11       Impact factor: 15.369

Review 6.  Dynamic chromatin: concerted nucleosome remodelling and acetylation.

Authors:  Anton Eberharter; Roger Ferreira; Peter Becker
Journal:  Biol Chem       Date:  2005-08       Impact factor: 3.915

7.  Distinct roles for the RSC and Swi/Snf ATP-dependent chromatin remodelers in DNA double-strand break repair.

Authors:  Bob Chai; Jian Huang; Bradley R Cairns; Brehon C Laurent
Journal:  Genes Dev       Date:  2005-07-15       Impact factor: 11.361

8.  Teaching resources. Chromatin remodeling.

Authors:  Neal F Lue
Journal:  Sci STKE       Date:  2005-07-26

9.  Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method.

Authors:  Andres E Leschziner; Anjanabha Saha; Jacqueline Wittmeyer; Yongli Zhang; Carlos Bustamante; Bradley R Cairns; Eva Nogales
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-13       Impact factor: 11.205

10.  Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14.

Authors:  Margaret Kasten; Heather Szerlong; Hediye Erdjument-Bromage; Paul Tempst; Michel Werner; Bradley R Cairns
Journal:  EMBO J       Date:  2004-03-04       Impact factor: 11.598

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  8 in total

1.  Kinetic proofreading in chromatin remodeling: the case of ISWI/ACF.

Authors:  Ralf Blossey; Helmut Schiessel
Journal:  Biophys J       Date:  2011-08-17       Impact factor: 4.033

2.  Binding kinetics of human ISWI chromatin-remodelers to DNA repair sites elucidate their target location mechanism.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Nucleus       Date:  2011 Mar-Apr       Impact factor: 4.197

3.  A systems view of the protein expression process.

Authors:  Sucheta Gokhale; Dimpal Nyayanit; Chetan Gadgil
Journal:  Syst Synth Biol       Date:  2011-10-19

Review 4.  The Latest Twists in Chromatin Remodeling.

Authors:  Ralf Blossey; Helmut Schiessel
Journal:  Biophys J       Date:  2018-01-06       Impact factor: 4.033

5.  HistoneHits: a database for histone mutations and their phenotypes.

Authors:  Hailiang Huang; Alexandra M Maertens; Edel M Hyland; Junbiao Dai; Anne Norris; Jef D Boeke; Joel S Bader
Journal:  Genome Res       Date:  2009-02-13       Impact factor: 9.043

6.  A framework for modelling gene regulation which accommodates non-equilibrium mechanisms.

Authors:  Tobias Ahsendorf; Felix Wong; Roland Eils; Jeremy Gunawardena
Journal:  BMC Biol       Date:  2014-12-05       Impact factor: 7.431

7.  Chromatin remodelers couple inchworm motion with twist-defect formation to slide nucleosomal DNA.

Authors:  Giovanni B Brandani; Shoji Takada
Journal:  PLoS Comput Biol       Date:  2018-11-05       Impact factor: 4.475

Review 8.  Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes.

Authors:  Geeta J Narlikar; Ramasubramanian Sundaramoorthy; Tom Owen-Hughes
Journal:  Cell       Date:  2013-08-01       Impact factor: 41.582

  8 in total

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