Literature DB >> 19402712

Two site-directed mutations are required for the conversion of a sugar dehydratase into an aminotransferase.

Paul D Cook1, Rachel L Kubiak, Daniel P Toomey, Hazel M Holden.   

Abstract

L-colitose and d-perosamine are unusual sugars found in the O-antigens of some Gram-negative bacteria such as Escherichia coli, Vibrio cholerae, and Salmonella enterica, among others. The biosynthetic pathways for these two sugars begin with the formation of GDP-mannose from d-mannose 1-phosphate and GTP followed by the subsequent dehydration and oxidation of GDP-mannose to yield GDP-4-keto-6-deoxymannose. Following the production of GDP-4-keto-6-deoxymannose, the two pathways diverge. In the case of GDP-perosamine biosynthesis, the next step involves an amination reaction at the C-4' position of the sugar, whereas in GDP-colitose production, the 3'-hydroxyl group is removed. The enzymes catalyzing these reactions are GDP-perosamine synthase and GDP-4-keto-6-deoxymannose-3-dehydratase (ColD), respectively. Both of these enzymes are pyridoxal 5'-phosphate (PLP) dependent, and their three-dimensional structures place them into the well-characterized aspartate aminotransferase superfamily. A comparison of the active site architecture of ColD from E. coli (strain 5a, type O55:H7) to that of GDP-perosamine synthase from Caulobacter crescentus CB15 suggested that only two mutations would be required to convert ColD into an aminotransferase. Here we present a combined structural and functional analysis of the ColD S187N/H188K mutant protein that, indeed, has been converted from a sugar dehydratase into an aminotransferase.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19402712      PMCID: PMC2731307          DOI: 10.1021/bi9005545

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  19 in total

1.  Pushing the boundaries of molecular replacement with maximum likelihood.

Authors:  R J Read
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-09-21

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Biosynthesis of colitose: expression, purification, and mechanistic characterization of GDP-4-keto-6-deoxy-D-mannose-3-dehydrase (ColD) and GDP-L-colitose synthase (ColC).

Authors:  Jenefer Alam; Noelle Beyer; Hung-wen Liu
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

4.  Accommodation of GDP-linked sugars in the active site of GDP-perosamine synthase.

Authors:  Paul D Cook; Amanda E Carney; Hazel M Holden
Journal:  Biochemistry       Date:  2008-09-17       Impact factor: 3.162

5.  Expression and identification of the RfbE protein from Vibrio cholerae O1 and its use for the enzymatic synthesis of GDP-D-perosamine.

Authors:  C Albermann; W Piepersberg
Journal:  Glycobiology       Date:  2001-08       Impact factor: 4.313

6.  A structural study of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: caught in the act of geminal diamine formation.

Authors:  Paul D Cook; Hazel M Holden
Journal:  Biochemistry       Date:  2007-11-13       Impact factor: 3.162

Review 7.  Structure and genetics of Shigella O antigens.

Authors:  Bin Liu; Yuriy A Knirel; Lu Feng; Andrei V Perepelov; Sof'ya N Senchenkova; Quan Wang; Peter R Reeves; Lei Wang
Journal:  FEMS Microbiol Rev       Date:  2008-04-16       Impact factor: 16.408

8.  Structure and mutagenic conversion of E1 dehydrase: at the crossroads of dehydration, amino transfer, and epimerization.

Authors:  Peter Smith; Ping-Hui Szu; Cynthia Bui; Hung-wen Liu; Shiou-Chuan Tsai
Journal:  Biochemistry       Date:  2008-05-21       Impact factor: 3.162

9.  GDP-4-keto-6-deoxy-D-mannose 3-dehydratase, accommodating a sugar substrate in the active site.

Authors:  Paul D Cook; Hazel M Holden
Journal:  J Biol Chem       Date:  2007-11-28       Impact factor: 5.157

10.  GDP-perosamine synthase: structural analysis and production of a novel trideoxysugar.

Authors:  Paul D Cook; Hazel M Holden
Journal:  Biochemistry       Date:  2008-02-05       Impact factor: 3.162

View more
  2 in total

Review 1.  The structural biology of enzymes involved in natural product glycosylation.

Authors:  Shanteri Singh; George N Phillips; Jon S Thorson
Journal:  Nat Prod Rep       Date:  2012-06-12       Impact factor: 13.423

Review 2.  Biosynthetic enzymes of unusual microbial sugars.

Authors:  Hazel M Holden; Paul D Cook; James B Thoden
Journal:  Curr Opin Struct Biol       Date:  2010-09-09       Impact factor: 6.809

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.