Literature DB >> 20832292

Biosynthetic enzymes of unusual microbial sugars.

Hazel M Holden1, Paul D Cook, James B Thoden.   

Abstract

The biological importance of proteins and nucleic acids in the natural world is undeniable, and research efforts on these macromolecules have often overshadowed those directed at carbohydrates. It is now known, however, that carbohydrates not only play roles in energy storage and plant cell wall structure, but are also intimately involved in such processes as fertilization, the immune response, and cell adhesion. Indeed, recent years have seen an explosion in research efforts directed at uncovering and understanding new sugar moieties. The dideoxysugars and trideoxysugars, which are synthesized by a variety of bacteria, fungi, and plants, represent an especially intriguing class of carbohydrates. They are found, for example, on the lipopolysaccharides of some Gram-negative bacteria or on antibacterial agents such as erythromycin. Many of them are formed from simple monosaccharides such as glucose-6-phosphate or fructose-6-phosphate via a myriad of enzymatic reactions including acetylations, aminations, dehydrations, epimerizations, reductions, and methylations. In this review we focus on the recent structural investigations of the bacterial N-acetyltransferases and the PLP-dependent aminotransferases that function on nucleotide-linked sugar substrates.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20832292      PMCID: PMC4254661          DOI: 10.1016/j.sbi.2010.08.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  29 in total

1.  Molecular structure of WlbB, a bacterial N-acetyltransferase involved in the biosynthesis of 2,3-diacetamido-2,3-dideoxy-D-mannuronic acid .

Authors:  James B Thoden; Hazel M Holden
Journal:  Biochemistry       Date:  2010-06-08       Impact factor: 3.162

2.  Biosynthesis of colitose: expression, purification, and mechanistic characterization of GDP-4-keto-6-deoxy-D-mannose-3-dehydrase (ColD) and GDP-L-colitose synthase (ColC).

Authors:  Jenefer Alam; Noelle Beyer; Hung-wen Liu
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

3.  Structure of the Escherichia coli GlmU pyrophosphorylase and acetyltransferase active sites.

Authors:  L R Olsen; S L Roderick
Journal:  Biochemistry       Date:  2001-02-20       Impact factor: 3.162

4.  A left-handed parallel beta helix in the structure of UDP-N-acetylglucosamine acyltransferase.

Authors:  C R Raetz; S L Roderick
Journal:  Science       Date:  1995-11-10       Impact factor: 47.728

5.  Crystal structure of the bifunctional N-acetylglucosamine 1-phosphate uridyltransferase from Escherichia coli: a paradigm for the related pyrophosphorylase superfamily.

Authors:  K Brown; F Pompeo; S Dixon; D Mengin-Lecreulx; C Cambillau; Y Bourne
Journal:  EMBO J       Date:  1999-08-02       Impact factor: 11.598

6.  Structural studies of Salmonella typhimurium ArnB (PmrH) aminotransferase: a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme.

Authors:  Brian W Noland; Janet M Newman; Jörg Hendle; John Badger; Jon A Christopher; Jason Tresser; Michelle D Buchanan; Tobi A Wright; Marc E Rutter; Wendy E Sanderson; Hans Joachim Müller-Dieckmann; Ketan S Gajiwala; Sean G Buchanan
Journal:  Structure       Date:  2002-11       Impact factor: 5.006

7.  Crystal structures of Streptococcus pneumoniae N-acetylglucosamine-1-phosphate uridyltransferase, GlmU, in apo form at 2.33 A resolution and in complex with UDP-N-acetylglucosamine and Mg(2+) at 1.96 A resolution.

Authors:  D Kostrewa; A D'Arcy; B Takacs; M Kamber
Journal:  J Mol Biol       Date:  2001-01-12       Impact factor: 5.469

8.  Sequence and analysis of the O antigen gene (rfb) cluster of Escherichia coli O111.

Authors:  D A Bastin; P R Reeves
Journal:  Gene       Date:  1995-10-16       Impact factor: 3.688

9.  The biosynthesis of GDP-L-colitose: C-3 deoxygenation is catalyzed by a unique coenzyme B6-dependent enzyme.

Authors:  Noelle Beyer; Jenefer Alam; Tina M Hallis; Zhihong Guo; Hung-wen Liu
Journal:  J Am Chem Soc       Date:  2003-05-14       Impact factor: 15.419

10.  A gene cluster for macrolide antibiotic biosynthesis in Streptomyces venezuelae: architecture of metabolic diversity.

Authors:  Y Xue; L Zhao; H W Liu; D H Sherman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

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  11 in total

Review 1.  The structural biology of enzymes involved in natural product glycosylation.

Authors:  Shanteri Singh; George N Phillips; Jon S Thorson
Journal:  Nat Prod Rep       Date:  2012-06-12       Impact factor: 13.423

2.  Structural and biochemical characterization of a bifunctional ketoisomerase/N-acetyltransferase from Shewanella denitrificans.

Authors:  Daniel P Chantigian; James B Thoden; Hazel M Holden
Journal:  Biochemistry       Date:  2013-11-04       Impact factor: 3.162

Review 3.  Mechanisms and structures of vitamin B(6)-dependent enzymes involved in deoxy sugar biosynthesis.

Authors:  Anthony J Romo; Hung-wen Liu
Journal:  Biochim Biophys Acta       Date:  2011-02-21

Review 4.  Bacterial carbohydrate diversity - a Brave New World.

Authors:  Barbara Imperiali
Journal:  Curr Opin Chem Biol       Date:  2019-06-06       Impact factor: 8.822

5.  Structure of the external aldimine form of PglE, an aminotransferase required for N,N'-diacetylbacillosamine biosynthesis.

Authors:  Alexander S Riegert; N Martin Young; David C Watson; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2015-07-30       Impact factor: 6.725

6.  Catalytic mechanism of perosamine N-acetyltransferase revealed by high-resolution X-ray crystallographic studies and kinetic analyses.

Authors:  James B Thoden; Laurie A Reinhardt; Paul D Cook; Patrick Menden; W W Cleland; Hazel M Holden
Journal:  Biochemistry       Date:  2012-04-10       Impact factor: 3.162

7.  Structures of KdnB and KdnA from Shewanella oneidensis: Key Enzymes in the Formation of 8-Amino-3,8-Dideoxy-d-Manno-Octulosonic Acid.

Authors:  Trevor R Zachman-Brockmeyer; James B Thoden; Hazel M Holden
Journal:  Biochemistry       Date:  2016-08-04       Impact factor: 3.162

Review 8.  The expanding horizons of asparagine-linked glycosylation.

Authors:  Angelyn Larkin; Barbara Imperiali
Journal:  Biochemistry       Date:  2011-05-04       Impact factor: 3.162

9.  Structural investigation on WlaRG from Campylobacter jejuni: A sugar aminotransferase.

Authors:  Garrett T Dow; Michel Gilbert; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2017-02-09       Impact factor: 6.725

10.  Biochemical investigation of an N-acetyltransferase from Helicobacter pullorum.

Authors:  William A Griffiths; Keelan D Spencer; James B Thoden; Hazel M Holden
Journal:  Protein Sci       Date:  2021-12       Impact factor: 6.725

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