Literature DB >> 11479276

Expression and identification of the RfbE protein from Vibrio cholerae O1 and its use for the enzymatic synthesis of GDP-D-perosamine.

C Albermann1, W Piepersberg.   

Abstract

The 4-amino-6-deoxy-monosaccharide D-perosamine is an important element in the glycosylation of interesting cell products, such as antibiotics and lipopolysaccharides (LPS) of Gram-positive and Gram-negative bacteria. The biosynthetic pathway of the precursor molecule, GDP-D-perosamine, in Vibrio cholerae O1 starts with an isomerisation of fructose-6-phosphate catalyzed by the bifunctional enzyme phosphomannose isomerase-guanosine diphosphomannose pyrophosphorylase (RfbA; E.C. 2.7.7.22) creating the intermediate mannose-6-phosphate, which is subsequently converted by the phosphomanno-mutase (RfbB; E.C. 5.4.2.8) and further by RfbA to GDP-D-mannose, to GDP-4 keto-6-deoxymannose by a 4,6-dehydratase (RfbD; E.C. 4.2.1.47) and finally to GDP-D-perosamine by an aminotransferase (RfbE; E.C. not yet classified). We cloned the rfbD and the rfbE genes of V. cholerae O1 in Escherichia coli expression vectors. Both biosynthetic enzymes were overproduced in E. coli BL21 (DE3) and their activities were analyzed. The enzymatic conversion from GDP-D-mannose to GDP-D-perosamine was optimized and the final product, GDP-D-perosamine, was purified and identified by nuclear magnetic resonance, mass spectrometry, and chromatography. The catalytically active form of the GDP-4-keto-6-deoxy-D-mannose-4-aminotransferase seems to be a tetramer of 170 kDa. The His-tag RfbE fusion protein has a Km of 0.06 mM and a Vmax value of 38 nkat/mg protein for the substrate GDP-4-keto-6-deoxy-D-mannose. The Km and Vmax values for the cosubstrate L-glutamate were 0.1 mM and 42 nkat/mg protein, respectively. The intention of this work is to establish a basis for both the in vitro production of GDP-D-perosamine and for an in vivo perosaminylation system in a suitable bacterial host, preferably E. coli.

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Year:  2001        PMID: 11479276     DOI: 10.1093/glycob/11.8.655

Source DB:  PubMed          Journal:  Glycobiology        ISSN: 0959-6658            Impact factor:   4.313


  9 in total

1.  Crystal structure of a tetrameric GDP-D-mannose 4,6-dehydratase from a bacterial GDP-D-rhamnose biosynthetic pathway.

Authors:  Nicole A Webb; Anne M Mulichak; Joseph S Lam; Heather L Rocchetta; R Michael Garavito
Journal:  Protein Sci       Date:  2004-02       Impact factor: 6.725

2.  Accommodation of GDP-linked sugars in the active site of GDP-perosamine synthase.

Authors:  Paul D Cook; Amanda E Carney; Hazel M Holden
Journal:  Biochemistry       Date:  2008-09-17       Impact factor: 3.162

3.  Catalytic mechanism of perosamine N-acetyltransferase revealed by high-resolution X-ray crystallographic studies and kinetic analyses.

Authors:  James B Thoden; Laurie A Reinhardt; Paul D Cook; Patrick Menden; W W Cleland; Hazel M Holden
Journal:  Biochemistry       Date:  2012-04-10       Impact factor: 3.162

4.  Two site-directed mutations are required for the conversion of a sugar dehydratase into an aminotransferase.

Authors:  Paul D Cook; Rachel L Kubiak; Daniel P Toomey; Hazel M Holden
Journal:  Biochemistry       Date:  2009-06-16       Impact factor: 3.162

5.  The structural basis for catalytic function of GMD and RMD, two closely related enzymes from the GDP-D-rhamnose biosynthesis pathway.

Authors:  Jerry D King; Karen K H Poon; Nicole A Webb; Erin M Anderson; David J McNally; Jean-Robert Brisson; Paul Messner; R M Garavito; Joseph S Lam
Journal:  FEBS J       Date:  2009-05       Impact factor: 5.542

6.  Analysis of the mycosamine biosynthesis and attachment genes in the nystatin biosynthetic gene cluster of Streptomyces noursei ATCC 11455.

Authors:  Aina Nedal; Håvard Sletta; Trygve Brautaset; Sven E F Borgos; Olga N Sekurova; Trond E Ellingsen; Sergey B Zotchev
Journal:  Appl Environ Microbiol       Date:  2007-09-28       Impact factor: 4.792

7.  Biochemical characterization of dTDP-D-Qui4N and dTDP-D-Qui4NAc biosynthetic pathways in Shigella dysenteriae type 7 and Escherichia coli O7.

Authors:  Ying Wang; Yanli Xu; Andrei V Perepelov; Yuanyuan Qi; Yuriy A Knirel; Lei Wang; Lu Feng
Journal:  J Bacteriol       Date:  2007-09-28       Impact factor: 3.490

8.  Characterization of the GDP-D-mannose biosynthesis pathway in Coxiella burnetii: the initial steps for GDP-β-D-virenose biosynthesis.

Authors:  Craig T Narasaki; Katja Mertens; James E Samuel
Journal:  PLoS One       Date:  2011-10-31       Impact factor: 3.240

Review 9.  New Glycosylated Polyene Macrolides: Refining the Ore from Genome Mining.

Authors:  Patrick Caffrey; Mark Hogan; Yuhao Song
Journal:  Antibiotics (Basel)       Date:  2022-03-03
  9 in total

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