Literature DB >> 19396177

FTIR analysis of GPCR activation using azido probes.

Shixin Ye1, Thomas Huber, Reiner Vogel, Thomas P Sakmar.   

Abstract

We demonstrate the site-directed incorporation of an IR-active amino acid, p-azido-L-phenylalanine (azidoF, 1), into the G protein-coupled receptor rhodopsin using amber codon suppression technology. The antisymmetric stretch vibration of the azido group absorbs at approximately 2,100 cm(-1) in a clear spectral window and is sensitive to its electrostatic environment. We used FTIR difference spectroscopy to monitor the azido probe and show that the electrostatic environments of specific interhelical networks change during receptor activation.

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Year:  2009        PMID: 19396177      PMCID: PMC2875874          DOI: 10.1038/nchembio.167

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  25 in total

Review 1.  Rhodopsin structure, dynamics, and activation: a perspective from crystallography, site-directed spin labeling, sulfhydryl reactivity, and disulfide cross-linking.

Authors:  Wayne L Hubbell; Christian Altenbach; Cheryl M Hubbell; H Gobind Khorana
Journal:  Adv Protein Chem       Date:  2003

2.  Coupling of retinal isomerization to the activation of rhodopsin.

Authors:  Ashish B Patel; Evan Crocker; Markus Eilers; Amiram Hirshfeld; Mordechai Sheves; Steven O Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-25       Impact factor: 11.205

3.  A general method for site-specific incorporation of unnatural amino acids into proteins.

Authors:  C J Noren; S J Anthony-Cahill; M C Griffith; P G Schultz
Journal:  Science       Date:  1989-04-14       Impact factor: 47.728

4.  Requirement of rigid-body motion of transmembrane helices for light activation of rhodopsin.

Authors:  D L Farrens; C Altenbach; K Yang; W L Hubbell; H G Khorana
Journal:  Science       Date:  1996-11-01       Impact factor: 47.728

5.  Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells.

Authors:  Kensaku Sakamoto; Akiko Hayashi; Ayako Sakamoto; Daisuke Kiga; Hiroshi Nakayama; Akiko Soma; Takatsugu Kobayashi; Makoto Kitabatake; Koji Takio; Kazuki Saito; Mikako Shirouzu; Ichiro Hirao; Shigeyuki Yokoyama
Journal:  Nucleic Acids Res       Date:  2002-11-01       Impact factor: 16.971

6.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

7.  Structure of bovine rhodopsin in a trigonal crystal form.

Authors:  Jade Li; Patricia C Edwards; Manfred Burghammer; Claudio Villa; Gebhard F X Schertler
Journal:  J Mol Biol       Date:  2004-11-05       Impact factor: 5.469

Review 8.  Discovery of new GPCR biology: one receptor structure at a time.

Authors:  Michael A Hanson; Raymond C Stevens
Journal:  Structure       Date:  2009-01-14       Impact factor: 5.006

9.  An expanded eukaryotic genetic code.

Authors:  Jason W Chin; T Ashton Cropp; J Christopher Anderson; Mridul Mukherji; Zhiwen Zhang; Peter G Schultz
Journal:  Science       Date:  2003-08-15       Impact factor: 47.728

10.  Membrane model for the G-protein-coupled receptor rhodopsin: hydrophobic interface and dynamical structure.

Authors:  Thomas Huber; Ana V Botelho; Klaus Beyer; Michael F Brown
Journal:  Biophys J       Date:  2004-04       Impact factor: 4.033

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  68 in total

1.  SEIRA spectroscopy on a membrane receptor monolayer using lipoprotein particles as carriers.

Authors:  Ekaterina Zaitseva; Marcia Saavedra; Sourabh Banerjee; Thomas P Sakmar; Reiner Vogel
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

Review 2.  Designer proteins: applications of genetic code expansion in cell biology.

Authors:  Lloyd Davis; Jason W Chin
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

Review 3.  The significance of G protein-coupled receptor crystallography for drug discovery.

Authors:  John A Salon; David T Lodowski; Krzysztof Palczewski
Journal:  Pharmacol Rev       Date:  2011-12       Impact factor: 25.468

4.  α-Helical element at the hormone-binding surface of the insulin receptor functions as a signaling element to activate its tyrosine kinase.

Authors:  Jonathan Whittaker; Linda J Whittaker; Charles T Roberts; Nelson B Phillips; Faramarz Ismail-Beigi; Michael C Lawrence; Michael A Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-26       Impact factor: 11.205

Review 5.  Structural approaches to understanding retinal proteins needed for vision.

Authors:  Tivadar Orban; Beata Jastrzebska; Krzysztof Palczewski
Journal:  Curr Opin Cell Biol       Date:  2013-11-28       Impact factor: 8.382

6.  Full-length cellular β-secretase has a trimeric subunit stoichiometry, and its sulfur-rich transmembrane interaction site modulates cytosolic copper compartmentalization.

Authors:  Filip Liebsch; Mark R P Aurousseau; Tobias Bethge; Hugo McGuire; Silvia Scolari; Andreas Herrmann; Rikard Blunck; Derek Bowie; Gerd Multhaup
Journal:  J Biol Chem       Date:  2017-06-21       Impact factor: 5.157

7.  Site-Specific Spectroscopic Reporters of the Local Electric Field, Hydration, Structure, and Dynamics of Biomolecules.

Authors:  Matthias M Waegele; Robert M Culik; Feng Gai
Journal:  J Phys Chem Lett       Date:  2011-09-23       Impact factor: 6.475

Review 8.  Escaping the flatlands: new approaches for studying the dynamic assembly and activation of GPCR signaling complexes.

Authors:  Thomas Huber; Thomas P Sakmar
Journal:  Trends Pharmacol Sci       Date:  2011-04-15       Impact factor: 14.819

Review 9.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

10.  Single-molecule observation of the ligand-induced population shift of rhodopsin, a G-protein-coupled receptor.

Authors:  Ryo Maeda; Michio Hiroshima; Takahiro Yamashita; Akimori Wada; Shoko Nishimura; Yasushi Sako; Yoshinori Shichida; Yasushi Imamoto
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

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