Literature DB >> 12409460

Site-specific incorporation of an unnatural amino acid into proteins in mammalian cells.

Kensaku Sakamoto1, Akiko Hayashi, Ayako Sakamoto, Daisuke Kiga, Hiroshi Nakayama, Akiko Soma, Takatsugu Kobayashi, Makoto Kitabatake, Koji Takio, Kazuki Saito, Mikako Shirouzu, Ichiro Hirao, Shigeyuki Yokoyama.   

Abstract

A suppressor tRNA(Tyr) and mutant tyrosyl-tRNA synthetase (TyrRS) pair was developed to incorporate 3-iodo-L-tyrosine into proteins in mammalian cells. First, the Escherichia coli suppressor tRNA(Tyr) gene was mutated, at three positions in the D arm, to generate the internal promoter for expression. However, this tRNA, together with the cognate TyrRS, failed to exhibit suppressor activity in mammalian cells. Then, we found that amber suppression can occur with the heterologous pair of E.coli TyrRS and Bacillus stearothermophilus suppressor tRNA(Tyr), which naturally contains the promoter sequence. Furthermore, the efficiency of this suppression was significantly improved when the suppressor tRNA was expressed from a gene cluster, in which the tRNA gene was tandemly repeated nine times in the same direction. For incorporation of 3-iodo-L-tyrosine, its specific E.coli TyrRS variant, TyrRS(V37C195), which we recently created, was expressed in mammalian cells, together with the B.stearothermophilus suppressor tRNA(Tyr), while 3-iodo-L-tyrosine was supplied in the growth medium. 3-Iodo-L-tyrosine was thus incorporated into the proteins at amber positions, with an occupancy of >95%. Finally, we demonstrated conditional 3-iodo-L-tyrosine incorporation, regulated by inducible expression of the TyrRS(V37C195) gene from a tetracycline-regulated promoter.

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Year:  2002        PMID: 12409460      PMCID: PMC135798          DOI: 10.1093/nar/gkf589

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  34 in total

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Authors:  G J Cotton; T W Muir
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Authors:  J D Bain; C Switzer; A R Chamberlin; S A Benner
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

3.  Amber suppression in mammalian cells dependent upon expression of an Escherichia coli aminoacyl-tRNA synthetase gene.

Authors:  H J Drabkin; H J Park; U L RajBhandary
Journal:  Mol Cell Biol       Date:  1996-03       Impact factor: 4.272

4.  Nicotinic receptor binding site probed with unnatural amino acid incorporation in intact cells.

Authors:  M W Nowak; P C Kearney; J R Sampson; M E Saks; C G Labarca; S K Silverman; W Zhong; J Thorson; J N Abelson; N Davidson
Journal:  Science       Date:  1995-04-21       Impact factor: 47.728

5.  Mutations to nonsense codons in human genetic disease: implications for gene therapy by nonsense suppressor tRNAs.

Authors:  J Atkinson; R Martin
Journal:  Nucleic Acids Res       Date:  1994-04-25       Impact factor: 16.971

6.  Ablation of Drosophila photoreceptor cells by conditional expression of a toxin gene.

Authors:  S Kunes; H Steller
Journal:  Genes Dev       Date:  1991-06       Impact factor: 11.361

7.  Suppression of nonsense mutations in cell culture and mice by multimerized suppressor tRNA genes.

Authors:  M Buvoli; A Buvoli; L A Leinwand
Journal:  Mol Cell Biol       Date:  2000-05       Impact factor: 4.272

8.  Expansion of the genetic code: site-directed p-fluoro-phenylalanine incorporation in Escherichia coli.

Authors:  R Furter
Journal:  Protein Sci       Date:  1998-02       Impact factor: 6.725

9.  Dual amino acid-selective and site-directed stable-isotope labeling of the human c-Ha-Ras protein by cell-free synthesis.

Authors:  T Yabuki; T Kigawa; N Dohmae; K Takio; T Terada; Y Ito; E D Laue; J A Cooper; M Kainosho; S Yokoyama
Journal:  J Biomol NMR       Date:  1998-04       Impact factor: 2.835

10.  Tetracycline-regulated suppression of amber codons in mammalian cells.

Authors:  H J Park; U L RajBhandary
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

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  70 in total

1.  SH3 domain-based phototrapping in living cells reveals Rho family GAP signaling complexes.

Authors:  Hirokazu Okada; Akiyoshi Uezu; Frank M Mason; Erik J Soderblom; M Arthur Moseley; Scott H Soderling
Journal:  Sci Signal       Date:  2011-11-29       Impact factor: 8.192

2.  Esterification of an unnatural amino acid structurally deviating from canonical amino acids promotes its uptake and incorporation into proteins in mammalian cells.

Authors:  Jeffrey K Takimoto; Zheng Xiang; Ji-Yong Kang; Lei Wang
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3.  In vivo incorporation of multiple unnatural amino acids through nonsense and frameshift suppression.

Authors:  Erik A Rodriguez; Henry A Lester; Dennis A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-25       Impact factor: 11.205

4.  Genetic encoding of non-natural amino acids in Drosophila melanogaster Schneider 2 cells.

Authors:  Takahito Mukai; Motoaki Wakiyama; Kensaku Sakamoto; Shigeyuki Yokoyama
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5.  Genetically encoding unnatural amino acids in neural stem cells and optically reporting voltage-sensitive domain changes in differentiated neurons.

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Journal:  Stem Cells       Date:  2011-08       Impact factor: 6.277

Review 6.  Beyond the canonical 20 amino acids: expanding the genetic lexicon.

Authors:  Travis S Young; Peter G Schultz
Journal:  J Biol Chem       Date:  2010-02-10       Impact factor: 5.157

Review 7.  Incorporation of Non-Canonical Amino Acids.

Authors:  Lilia Leisle; Francis Valiyaveetil; Ryan A Mehl; Christopher A Ahern
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

8.  Complete set of orthogonal 21st aminoacyl-tRNA synthetase-amber, ochre and opal suppressor tRNA pairs: concomitant suppression of three different termination codons in an mRNA in mammalian cells.

Authors:  Caroline Köhrer; Eric L Sullivan; Uttam L RajBhandary
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

9.  Resurrecting the Bacterial Tyrosyl-tRNA Synthetase/tRNA Pair for Expanding the Genetic Code of Both E. coli and Eukaryotes.

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Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

10.  Functional replacement of the endogenous tyrosyl-tRNA synthetase-tRNATyr pair by the archaeal tyrosine pair in Escherichia coli for genetic code expansion.

Authors:  Fumie Iraha; Kenji Oki; Takatsugu Kobayashi; Satoshi Ohno; Takashi Yokogawa; Kazuya Nishikawa; Shigeyuki Yokoyama; Kensaku Sakamoto
Journal:  Nucleic Acids Res       Date:  2010-02-16       Impact factor: 16.971

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