Literature DB >> 21497404

Escaping the flatlands: new approaches for studying the dynamic assembly and activation of GPCR signaling complexes.

Thomas Huber1, Thomas P Sakmar.   

Abstract

Despite significant recent advances in molecular and structural studies of G protein-coupled receptors (GPCRs), an understanding of transmembrane signal transduction with chemical precision requires new approaches. Simple binary receptor-ligand or receptor-G protein complex models cannot adequately describe the relevant macromolecular signaling machineries. GPCR signalosomes undergo complex dynamic assembly-disassembly reactions to create allosteric signaling conduits whose properties cannot necessarily be predicted from individual elements alone. The combinatorial possibilities inherent in a system with hundreds of potential components suggest that high-content miniaturized experimental platforms and computational approaches will be required. To study allosteric effects involved in signalosome reaction pathways, a bottom-up approach using multicolor single-molecule detection fluorescence experiments in biochemically defined systems and complemented by molecular dynamics models of macromolecular complexes is proposed. In bridging the gap between molecular and systems biology, this synthetic approach suggests a way forward from the flatlands to multi-dimensional data collection.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21497404      PMCID: PMC3128647          DOI: 10.1016/j.tips.2011.03.004

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  93 in total

1.  Micropatterned immobilization of a G protein-coupled receptor and direct detection of G protein activation.

Authors:  C Bieri; O P Ernst; S Heyse; K P Hofmann; H Vogel
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2.  Heterotrimeric G proteins precouple with G protein-coupled receptors in living cells.

Authors:  Muriel Nobles; Amy Benians; Andrew Tinker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-13       Impact factor: 11.205

Review 3.  Heterotrimeric G protein activation by G-protein-coupled receptors.

Authors:  William M Oldham; Heidi E Hamm
Journal:  Nat Rev Mol Cell Biol       Date:  2008-01       Impact factor: 94.444

4.  Curvature and hydrophobic forces drive oligomerization and modulate activity of rhodopsin in membranes.

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Journal:  Biophys J       Date:  2006-09-29       Impact factor: 4.033

5.  Light- and GTP-regulated interaction of GTPase and other proteins with bovine photoreceptor membranes.

Authors:  H Kühn
Journal:  Nature       Date:  1980-02-07       Impact factor: 49.962

6.  The 2.0 A crystal structure of a heterotrimeric G protein.

Authors:  D G Lambright; J Sondek; A Bohm; N P Skiba; H E Hamm; P B Sigler
Journal:  Nature       Date:  1996-01-25       Impact factor: 49.962

7.  Monitoring the diffusion of single heterotrimeric G proteins in supported cell-membrane sheets reveals their partitioning into microdomains.

Authors:  Jean-Baptiste Perez; Jean-Manuel Segura; Daniel Abankwa; Joachim Piguet; Karen L Martinez; Horst Vogel
Journal:  J Mol Biol       Date:  2006-08-18       Impact factor: 5.469

8.  Direct measurement of thermal stability of expressed CCR5 and stabilization by small molecule ligands.

Authors:  Adam M Knepp; Amy Grunbeck; Sourabh Banerjee; Thomas P Sakmar; Thomas Huber
Journal:  Biochemistry       Date:  2010-12-30       Impact factor: 3.162

9.  Characterization of RANTES- and aminooxypentane-RANTES-triggered desensitization signals reveals differences in recruitment of the G protein-coupled receptor complex.

Authors:  A J Vila-Coro; M Mellado; A Martín de Ana; C Martínez-A; J M Rodríguez-Frade
Journal:  J Immunol       Date:  1999-09-15       Impact factor: 5.422

10.  Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis.

Authors:  D E Coleman; A M Berghuis; E Lee; M E Linder; A G Gilman; S R Sprang
Journal:  Science       Date:  1994-09-02       Impact factor: 47.728

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  12 in total

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Journal:  Nature       Date:  2011-09-28       Impact factor: 49.962

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3.  Receptors: clicking class B GPCR ligands.

Authors:  Thomas P Sakmar
Journal:  Nat Chem Biol       Date:  2011-07-18       Impact factor: 15.040

4.  Genetically-encoded molecular probes to study G protein-coupled receptors.

Authors:  Saranga Naganathan; Amy Grunbeck; He Tian; Thomas Huber; Thomas P Sakmar
Journal:  J Vis Exp       Date:  2013-09-13       Impact factor: 1.355

Review 5.  Fluorescent approaches for understanding interactions of ligands with G protein coupled receptors.

Authors:  Rajashri Sridharan; Jeffrey Zuber; Sara M Connelly; Elizabeth Mathew; Mark E Dumont
Journal:  Biochim Biophys Acta       Date:  2013-09-18

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7.  Bioorthogonal fluorescent labeling of functional G-protein-coupled receptors.

Authors:  He Tian; Saranga Naganathan; Manija A Kazmi; Thue W Schwartz; Thomas P Sakmar; Thomas Huber
Journal:  Chembiochem       Date:  2014-07-18       Impact factor: 3.164

Review 8.  Beyond standard molecular dynamics: investigating the molecular mechanisms of G protein-coupled receptors with enhanced molecular dynamics methods.

Authors:  Jennifer M Johnston; Marta Filizola
Journal:  Adv Exp Med Biol       Date:  2014       Impact factor: 2.622

Review 9.  Fluorescence spectroscopy of rhodopsins: insights and approaches.

Authors:  Ulrike Alexiev; David L Farrens
Journal:  Biochim Biophys Acta       Date:  2013-10-29

Review 10.  Molecular signatures of G-protein-coupled receptors.

Authors:  A J Venkatakrishnan; Xavier Deupi; Guillaume Lebon; Christopher G Tate; Gebhard F Schertler; M Madan Babu
Journal:  Nature       Date:  2013-02-14       Impact factor: 49.962

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