Literature DB >> 26381943

Incorporation of Non-Canonical Amino Acids.

Lilia Leisle1, Francis Valiyaveetil2, Ryan A Mehl3, Christopher A Ahern4.   

Abstract

In this chapter we discuss the strengths, caveats and technical considerations of three approaches for reprogramming the chemical composition of selected amino acids within a membrane protein. In vivo nonsense suppression in the Xenopus laevis oocyte, evolved orthogonal tRNA and aminoacyl-tRNA synthetase pairs and protein ligation for biochemical production of semisynthetic proteins have been used successfully for ion channel and receptor studies. The level of difficulty for the application of each approach ranges from trivial to technically demanding, yet all have untapped potential in their application to membrane proteins.

Entities:  

Keywords:  Evolved tRNA synthetase pairs; Intein ligation; Nonsense suppression; Protein semi-synthesis

Mesh:

Substances:

Year:  2015        PMID: 26381943      PMCID: PMC6005199          DOI: 10.1007/978-1-4939-2845-3_7

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  165 in total

1.  Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression.

Authors:  J Christopher Anderson; Peter G Schultz
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

2.  Tom7 regulates Mdm10-mediated assembly of the mitochondrial import channel protein Tom40.

Authors:  Koji Yamano; Sachiko Tanaka-Yamano; Toshiya Endo
Journal:  J Biol Chem       Date:  2010-10-29       Impact factor: 5.157

3.  Aminoacylation of transfer RNAs with one and two amino acids.

Authors:  Maria Duca; Shengxi Chen; Sidney M Hecht
Journal:  Methods       Date:  2008-02       Impact factor: 3.608

4.  In vivo incorporation of unnatural amino acids into ion channels in Xenopus oocyte expression system.

Authors:  M W Nowak; J P Gallivan; S K Silverman; C G Labarca; D A Dougherty; H A Lester
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

5.  A convenient method for genetic incorporation of multiple noncanonical amino acids into one protein in Escherichia coli.

Authors:  Ying Huang; William K Russell; Wei Wan; Pei-Jing Pai; David H Russell; Wenshe Liu
Journal:  Mol Biosyst       Date:  2010-02-15

6.  A bacterial amber suppressor in Saccharomyces cerevisiae is selectively recognized by a bacterial aminoacyl-tRNA synthetase.

Authors:  H Edwards; P Schimmel
Journal:  Mol Cell Biol       Date:  1990-04       Impact factor: 4.272

7.  Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.

Authors:  Gayathri Srinivasan; Carey M James; Joseph A Krzycki
Journal:  Science       Date:  2002-05-24       Impact factor: 47.728

8.  In vivo protein-interaction mapping of a mitochondrial translocator protein Tom22 at work.

Authors:  Takuya Shiota; Hide Mabuchi; Sachiko Tanaka-Yamano; Koji Yamano; Toshiya Endo
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-06       Impact factor: 11.205

9.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

10.  RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Authors:  David B F Johnson; Jianfeng Xu; Zhouxin Shen; Jeffrey K Takimoto; Matthew D Schultz; Robert J Schmitz; Zheng Xiang; Joseph R Ecker; Steven P Briggs; Lei Wang
Journal:  Nat Chem Biol       Date:  2011-09-18       Impact factor: 15.040

View more
  14 in total

1.  Nanosecond-Timescale Dynamics and Conformational Heterogeneity in Human GCK Regulation and Disease.

Authors:  Shawn M Sternisha; A Carl Whittington; Juliana A Martinez Fiesco; Carol Porter; Malcolm M McCray; Timothy Logan; Cristina Olivieri; Gianluigi Veglia; Peter J Steinbach; Brian G Miller
Journal:  Biophys J       Date:  2020-01-14       Impact factor: 4.033

2.  IR Spectroscopy Can Reveal the Mechanism of K+ Transport in Ion Channels.

Authors:  Steven E Strong; Nicholas J Hestand; Alexei A Kananenka; Martin T Zanni; J L Skinner
Journal:  Biophys J       Date:  2019-11-20       Impact factor: 4.033

3.  Monitoring Replication Protein A (RPA) dynamics in homologous recombination through site-specific incorporation of non-canonical amino acids.

Authors:  Nilisha Pokhrel; Sofia Origanti; Eric Parker Davenport; Disha Gandhi; Kyle Kaniecki; Ryan A Mehl; Eric C Greene; Chris Dockendorff; Edwin Antony
Journal:  Nucleic Acids Res       Date:  2017-09-19       Impact factor: 16.971

4.  Role of a conserved ion-binding site tyrosine in ion selectivity of the Na+/K+ pump.

Authors:  Kerri Spontarelli; Daniel T Infield; Hang N Nielsen; Rikke Holm; Victoria C Young; Jason D Galpin; Christopher A Ahern; Bente Vilsen; Pablo Artigas
Journal:  J Gen Physiol       Date:  2022-06-03       Impact factor: 4.000

5.  Optocontrol of glutamate receptor activity by single side-chain photoisomerization.

Authors:  Viktoria Klippenstein; Christian Hoppmann; Shixin Ye; Lei Wang; Pierre Paoletti
Journal:  Elife       Date:  2017-05-23       Impact factor: 8.140

6.  Cellular encoding of Cy dyes for single-molecule imaging.

Authors:  Lilia Leisle; Rahul Chadda; John D Lueck; Daniel T Infield; Jason D Galpin; Venkatramanan Krishnamani; Janice L Robertson; Christopher A Ahern
Journal:  Elife       Date:  2016-12-12       Impact factor: 8.140

7.  Exploring protein phosphorylation by combining computational approaches and biochemical methods.

Authors:  Gonzalo Pérez-Mejías; Alejandro Velázquez-Cruz; Alejandra Guerra-Castellano; Blanca Baños-Jaime; Antonio Díaz-Quintana; Katiuska González-Arzola; Miguel Ángel De la Rosa; Irene Díaz-Moreno
Journal:  Comput Struct Biotechnol J       Date:  2020-07-07       Impact factor: 7.271

Review 8.  Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells.

Authors:  Alexander R Nödling; Luke A Spear; Thomas L Williams; Louis Y P Luk; Yu-Hsuan Tsai
Journal:  Essays Biochem       Date:  2019-07-03       Impact factor: 8.000

Review 9.  Motif mediated protein-protein interactions as drug targets.

Authors:  Carles Corbi-Verge; Philip M Kim
Journal:  Cell Commun Signal       Date:  2016-03-02       Impact factor: 5.712

10.  Orthogonality of Pyrrolysine tRNA in the Xenopus oocyte.

Authors:  Daniel T Infield; John D Lueck; Jason D Galpin; Grace D Galles; Christopher A Ahern
Journal:  Sci Rep       Date:  2018-03-26       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.