Literature DB >> 21515763

Complete genome sequence of Lactobacillus delbrueckii subsp. bulgaricus strain ND02.

Zhihong Sun1, Xia Chen, Jicheng Wang, Wenjing Zhao, Yuyu Shao, Zhuang Guo, Xingchang Zhang, Zhemin Zhou, Tiansong Sun, Lei Wang, He Meng, Heping Zhang, Wei Chen.   

Abstract

Lactobacillus delbrueckii subsp. bulgaricus strain ND02 is a Chinese commercial dairy starter used for the manufacture of yoghurt. It was isolated from naturally fermented yak milk in Qinghai, China. Here, we report the main genome features of ND02 and several differences with two other published genomes of Lactobacillus delbrueckii subsp. bulgaricus strains.

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Year:  2011        PMID： 21515763      PMCID： PMC3133281          DOI： 10.1128/JB.05004-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  9 in total

1.  The complete genome sequence of Lactobacillus bulgaricus reveals extensive and ongoing reductive evolution.

Authors:  M van de Guchte; S Penaud; C Grimaldi; V Barbe; K Bryson; P Nicolas; C Robert; S Oztas; S Mangenot; A Couloux; V Loux; R Dervyn; R Bossy; A Bolotin; J-M Batto; T Walunas; J-F Gibrat; P Bessières; J Weissenbach; S D Ehrlich; E Maguin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-05       Impact factor: 11.205

2.  Identification and characterization of the dominant lactic acid bacteria from kurut: the naturally fermented yak milk in Qinghai, China.

Authors:  Zhihong Sun; Wenjun Liu; Wa Gao; Mei Yang; Jiachao Zhang; Lan Wu; Junguo Wang; Bilige Menghe; Tiansong Sun; Heping Zhang
Journal:  J Gen Appl Microbiol       Date:  2010-02       Impact factor: 1.452

3.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

4.  Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12.

Authors:  Thomas Ferenci; Zhemin Zhou; Thu Betteridge; Yan Ren; Yu Liu; Lu Feng; Peter R Reeves; Lei Wang
Journal:  J Bacteriol       Date:  2009-04-17       Impact factor: 3.490

5.  Regulation of the raffinose permease of Escherichia coli by the glucose-specific enzyme IIA of the phosphoenolpyruvate:sugar phosphotransferase system.

Authors:  F Titgemeyer; R E Mason; M H Saier
Journal:  J Bacteriol       Date:  1994-01       Impact factor: 3.490

6.  Comparative genomics of the lactic acid bacteria.

Authors:  K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

7.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

8.  A recalibrated molecular clock and independent origins for the cholera pandemic clones.

Authors:  Lu Feng; Peter R Reeves; Ruiting Lan; Yi Ren; Chunxu Gao; Zhemin Zhou; Yan Ren; Jiansong Cheng; Wei Wang; Jianmei Wang; Wubin Qian; Dan Li; Lei Wang
Journal:  PLoS One       Date:  2008-12-30       Impact factor: 3.240

9.  Accurate whole human genome sequencing using reversible terminator chemistry.

Authors:  David R Bentley; Shankar Balasubramanian; Harold P Swerdlow; Geoffrey P Smith; John Milton; Clive G Brown; Kevin P Hall; Dirk J Evers; Colin L Barnes; Helen R Bignell; Jonathan M Boutell; Jason Bryant; Richard J Carter; R Keira Cheetham; Anthony J Cox; Darren J Ellis; Michael R Flatbush; Niall A Gormley; Sean J Humphray; Leslie J Irving; Mirian S Karbelashvili; Scott M Kirk; Heng Li; Xiaohai Liu; Klaus S Maisinger; Lisa J Murray; Bojan Obradovic; Tobias Ost; Michael L Parkinson; Mark R Pratt; Isabelle M J Rasolonjatovo; Mark T Reed; Roberto Rigatti; Chiara Rodighiero; Mark T Ross; Andrea Sabot; Subramanian V Sankar; Aylwyn Scally; Gary P Schroth; Mark E Smith; Vincent P Smith; Anastassia Spiridou; Peta E Torrance; Svilen S Tzonev; Eric H Vermaas; Klaudia Walter; Xiaolin Wu; Lu Zhang; Mohammed D Alam; Carole Anastasi; Ify C Aniebo; David M D Bailey; Iain R Bancarz; Saibal Banerjee; Selena G Barbour; Primo A Baybayan; Vincent A Benoit; Kevin F Benson; Claire Bevis; Phillip J Black; Asha Boodhun; Joe S Brennan; John A Bridgham; Rob C Brown; Andrew A Brown; Dale H Buermann; Abass A Bundu; James C Burrows; Nigel P Carter; Nestor Castillo; Maria Chiara E Catenazzi; Simon Chang; R Neil Cooley; Natasha R Crake; Olubunmi O Dada; Konstantinos D Diakoumakos; Belen Dominguez-Fernandez; David J Earnshaw; Ugonna C Egbujor; David W Elmore; Sergey S Etchin; Mark R Ewan; Milan Fedurco; Louise J Fraser; Karin V Fuentes Fajardo; W Scott Furey; David George; Kimberley J Gietzen; Colin P Goddard; George S Golda; Philip A Granieri; David E Green; David L Gustafson; Nancy F Hansen; Kevin Harnish; Christian D Haudenschild; Narinder I Heyer; Matthew M Hims; Johnny T Ho; Adrian M Horgan; Katya Hoschler; Steve Hurwitz; Denis V Ivanov; Maria Q Johnson; Terena James; T A Huw Jones; Gyoung-Dong Kang; Tzvetana H Kerelska; Alan D Kersey; Irina Khrebtukova; Alex P Kindwall; Zoya Kingsbury; Paula I Kokko-Gonzales; Anil Kumar; Marc A Laurent; Cynthia T Lawley; Sarah E Lee; Xavier Lee; Arnold K Liao; Jennifer A Loch; Mitch Lok; Shujun Luo; Radhika M Mammen; John W Martin; Patrick G McCauley; Paul McNitt; Parul Mehta; Keith W Moon; Joe W Mullens; Taksina Newington; Zemin Ning; Bee Ling Ng; Sonia M Novo; Michael J O'Neill; Mark A Osborne; Andrew Osnowski; Omead Ostadan; Lambros L Paraschos; Lea Pickering; Andrew C Pike; Alger C Pike; D Chris Pinkard; Daniel P Pliskin; Joe Podhasky; Victor J Quijano; Come Raczy; Vicki H Rae; Stephen R Rawlings; Ana Chiva Rodriguez; Phyllida M Roe; John Rogers; Maria C Rogert Bacigalupo; Nikolai Romanov; Anthony Romieu; Rithy K Roth; Natalie J Rourke; Silke T Ruediger; Eli Rusman; Raquel M Sanches-Kuiper; Martin R Schenker; Josefina M Seoane; Richard J Shaw; Mitch K Shiver; Steven W Short; Ning L Sizto; Johannes P Sluis; Melanie A Smith; Jean Ernest Sohna Sohna; Eric J Spence; Kim Stevens; Neil Sutton; Lukasz Szajkowski; Carolyn L Tregidgo; Gerardo Turcatti; Stephanie Vandevondele; Yuli Verhovsky; Selene M Virk; Suzanne Wakelin; Gregory C Walcott; Jingwen Wang; Graham J Worsley; Juying Yan; Ling Yau; Mike Zuerlein; Jane Rogers; James C Mullikin; Matthew E Hurles; Nick J McCooke; John S West; Frank L Oaks; Peter L Lundberg; David Klenerman; Richard Durbin; Anthony J Smith
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962
  9 in total
  9 in total

1.  Interspecies Inhibition of Porphyromonas gingivalis by Yogurt-Derived Lactobacillus delbrueckii Requires Active Pyruvate Oxidase.

Authors:  Louis P Cornacchione; Brian A Klein; Margaret J Duncan; Linden T Hu
Journal:  Appl Environ Microbiol       Date:  2019-08-29       Impact factor: 4.792

2.  Novel phage group infecting Lactobacillus delbrueckii subsp. lactis, as revealed by genomic and proteomic analysis of bacteriophage Ldl1.

Authors:  Eoghan Casey; Jennifer Mahony; Horst Neve; Jean-Paul Noben; Fabio Dal Bello; Douwe van Sinderen
Journal:  Appl Environ Microbiol       Date:  2015-02       Impact factor: 4.792

3.  GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum.

Authors:  I-Chiao Lee; Iris I van Swam; Satoru Tomita; Pierre Morsomme; Thomas Rolain; Pascal Hols; Michiel Kleerebezem; Peter A Bron
Journal:  J Bacteriol       Date:  2014-02-14       Impact factor: 3.490

4.  Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue.

Authors:  Hela El Kafsi; Valentin Loux; Mahendra Mariadassou; Camille Blin; Hélène Chiapello; Anne-Laure Abraham; Emmanuelle Maguin; Maarten van de Guchte
Journal:  Sci Rep       Date:  2017-03-10       Impact factor: 4.379

5.  Novel shuttle vector pGMβ1 for conjugative chromosomal manipulation of Lactobacillus delbrueckii subsp. bulgaricus.

Authors:  Daiki Iwamoto; Megumi Ishizaki; Taiki Miura; Yasuko Sasaki
Journal:  Biosci Microbiota Food Health       Date:  2021-10-18

6.  Genome Sequence of the Cheese-Starter Strain Lactobacillus delbrueckii subsp. lactis CRL 581.

Authors:  Elvira María Hebert; Raúl R Raya; Lucía Brown; Graciela Font de Valdez; Graciela Savoy de Giori; María Pía Taranto
Journal:  Genome Announc       Date:  2013-08-08

7.  NADH Oxidase of Streptococcus thermophilus 1131 is Required for the Effective Yogurt Fermentation with Lactobacillus delbrueckii subsp. bulgaricus 2038.

Authors:  Yasuko Sasaki; Hiroshi Horiuchi; Hiroko Kawashima; Takao Mukai; Yuji Yamamoto
Journal:  Biosci Microbiota Food Health       Date:  2014-01-30

8.  Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action.

Authors:  Hela El Kafsi; Johan Binesse; Valentin Loux; Julien Buratti; Samira Boudebbouze; Rozenn Dervyn; Sean Kennedy; Nathalie Galleron; Benoît Quinquis; Jean-Michel Batto; Bouziane Moumen; Emmanuelle Maguin; Maarten van de Guchte
Journal:  BMC Genomics       Date:  2014-05-28       Impact factor: 3.969

9.  Draft Genome Sequence of Lactobacillus delbrueckii Strain #22 Isolated from a Patient with Short Bowel Syndrome and Previous d-Lactic Acidosis and Encephalopathy.

Authors:  Eugen Domann; Florence Fischer; Fabian Glowatzki; Moritz Fritzenwanker; Torsten Hain; Silke Zechel-Gran; Susanne Giffhorn-Katz; Bernd A Neubauer
Journal:  Genome Announc       Date:  2016-07-28
  9 in total

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