Literature DB >> 20543067

Genomic identification of a novel mutation in hfq that provides multiple benefits in evolving glucose-limited populations of Escherichia coli.

Ram Maharjan1, Zhemin Zhou, Yan Ren, Yang Li, Joël Gaffé, Dominique Schneider, Christopher McKenzie, Peter R Reeves, Thomas Ferenci, Lei Wang.   

Abstract

Beneficial mutations in diversifying glucose-limited Escherichia coli populations are mostly unidentified. The genome of an evolved isolate with multiple differences from that of the ancestor was fully assembled. Remarkably, a single mutation in hfq was responsible for the multiple benefits under glucose limitation through changes in at least five regulation targets.

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Year:  2010        PMID: 20543067      PMCID: PMC2937378          DOI: 10.1128/JB.00368-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  34 in total

1.  Escherichia coli Hfq has distinct interaction surfaces for DsrA, rpoS and poly(A) RNAs.

Authors:  Peter J Mikulecky; Meenakshi K Kaw; Cristin C Brescia; Jennifer C Takach; Darren D Sledjeski; Andrew L Feig
Journal:  Nat Struct Mol Biol       Date:  2004-11-07       Impact factor: 15.369

Review 2.  DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

Authors:  Andrew Travers; Georgi Muskhelishvili
Journal:  Nat Rev Microbiol       Date:  2005-02       Impact factor: 60.633

3.  Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection.

Authors:  Estelle Crozat; Nadège Philippe; Richard E Lenski; Johannes Geiselmann; Dominique Schneider
Journal:  Genetics       Date:  2004-10-16       Impact factor: 4.562

Review 4.  Maintaining a healthy SPANC balance through regulatory and mutational adaptation.

Authors:  Thomas Ferenci
Journal:  Mol Microbiol       Date:  2005-07       Impact factor: 3.501

5.  Genome sequencing in microfabricated high-density picolitre reactors.

Authors:  Marcel Margulies; Michael Egholm; William E Altman; Said Attiya; Joel S Bader; Lisa A Bemben; Jan Berka; Michael S Braverman; Yi-Ju Chen; Zhoutao Chen; Scott B Dewell; Lei Du; Joseph M Fierro; Xavier V Gomes; Brian C Godwin; Wen He; Scott Helgesen; Chun Heen Ho; Chun He Ho; Gerard P Irzyk; Szilveszter C Jando; Maria L I Alenquer; Thomas P Jarvie; Kshama B Jirage; Jong-Bum Kim; James R Knight; Janna R Lanza; John H Leamon; Steven M Lefkowitz; Ming Lei; Jing Li; Kenton L Lohman; Hong Lu; Vinod B Makhijani; Keith E McDade; Michael P McKenna; Eugene W Myers; Elizabeth Nickerson; John R Nobile; Ramona Plant; Bernard P Puc; Michael T Ronan; George T Roth; Gary J Sarkis; Jan Fredrik Simons; John W Simpson; Maithreyan Srinivasan; Karrie R Tartaro; Alexander Tomasz; Kari A Vogt; Greg A Volkmer; Shally H Wang; Yong Wang; Michael P Weiner; Pengguang Yu; Richard F Begley; Jonathan M Rothberg
Journal:  Nature       Date:  2005-07-31       Impact factor: 49.962

6.  Clonal adaptive radiation in a constant environment.

Authors:  Ram Maharjan; Shona Seeto; Lucinda Notley-McRobb; Thomas Ferenci
Journal:  Science       Date:  2006-07-06       Impact factor: 47.728

7.  Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations.

Authors:  Thea King; Shona Seeto; Thomas Ferenci
Journal:  Genetics       Date:  2006-02-19       Impact factor: 4.562

8.  Experiments with the Chemostat on spontaneous mutations of bacteria.

Authors:  A NOVICK; L SZILARD
Journal:  Proc Natl Acad Sci U S A       Date:  1950-12       Impact factor: 11.205

9.  Characterization of broadly pleiotropic phenotypes caused by an hfq insertion mutation in Escherichia coli K-12.

Authors:  H C Tsui; H C Leung; M E Winkler
Journal:  Mol Microbiol       Date:  1994-07       Impact factor: 3.501

10.  Differential expression of mal genes under cAMP and endogenous inducer control in nutrient-stressed Escherichia coli.

Authors:  L Notley; T Ferenci
Journal:  Mol Microbiol       Date:  1995-04       Impact factor: 3.501

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  12 in total

1.  The basis of antagonistic pleiotropy in hfq mutations that have opposite effects on fitness at slow and fast growth rates.

Authors:  R Maharjan; C McKenzie; A Yeung; T Ferenci
Journal:  Heredity (Edinb)       Date:  2012-11-21       Impact factor: 3.821

2.  Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coli.

Authors:  Jeremy J Minty; Ann A Lesnefsky; Fengming Lin; Yu Chen; Ted A Zaroff; Artur B Veloso; Bin Xie; Catie A McConnell; Rebecca J Ward; Donald R Schwartz; Jean-Marie Rouillard; Yuan Gao; Erdogan Gulari; Xiaoxia Nina Lin
Journal:  Microb Cell Fact       Date:  2011-03-25       Impact factor: 5.328

3.  Insertion sequence-driven evolution of Escherichia coli in chemostats.

Authors:  Joël Gaffé; Christopher McKenzie; Ram P Maharjan; Evelyne Coursange; Tom Ferenci; Dominique Schneider
Journal:  J Mol Evol       Date:  2011-03-12       Impact factor: 2.395

4.  Adaptation of Escherichia coli to elevated sodium concentrations increases cation tolerance and enables greater lactic acid production.

Authors:  Xianghao Wu; Ronni Altman; Mark A Eiteman; Elliot Altman
Journal:  Appl Environ Microbiol       Date:  2014-02-28       Impact factor: 4.792

5.  Genetic basis of growth adaptation of Escherichia coli after deletion of pgi, a major metabolic gene.

Authors:  Pep Charusanti; Tom M Conrad; Eric M Knight; Karthik Venkataraman; Nicole L Fong; Bin Xie; Yuan Gao; Bernhard Ø Palsson
Journal:  PLoS Genet       Date:  2010-11-04       Impact factor: 5.917

6.  The multiplicity of divergence mechanisms in a single evolving population.

Authors:  Ram P Maharjan; Thomas Ferenci; Peter R Reeves; Yang Li; Bin Liu; Lei Wang
Journal:  Genome Biol       Date:  2012-06-08       Impact factor: 13.583

7.  Simple phenotypic sweeps hide complex genetic changes in populations.

Authors:  Ram P Maharjan; Bin Liu; Lu Feng; Thomas Ferenci; Lei Wang
Journal:  Genome Biol Evol       Date:  2015-01-13       Impact factor: 3.416

8.  A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli.

Authors:  Ram P Maharjan; Joël Gaffé; Jessica Plucain; Martin Schliep; Lei Wang; Lu Feng; Olivier Tenaillon; Thomas Ferenci; Dominique Schneider
Journal:  BMC Genomics       Date:  2013-07-03       Impact factor: 3.969

9.  Ex uno plures: clonal reinforcement drives evolution of a simple microbial community.

Authors:  Margie Kinnersley; Jared Wenger; Evgueny Kroll; Julian Adams; Gavin Sherlock; Frank Rosenzweig
Journal:  PLoS Genet       Date:  2014-06-26       Impact factor: 5.917

10.  Characterization of mutations in the PAS domain of the EvgS sensor kinase selected by laboratory evolution for acid resistance in Escherichia coli.

Authors:  Matthew D Johnson; James Bell; Kim Clarke; Rachel Chandler; Prachi Pathak; Yandong Xia; Robert L Marshall; George M Weinstock; Nicholas J Loman; Peter J Winn; Peter A Lund
Journal:  Mol Microbiol       Date:  2014-07-24       Impact factor: 3.501

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