Literature DB >> 19376708

Deconstructing ribosome construction.

Keith Connolly1, Gloria Culver.   

Abstract

The ribosome is an essential ribonucleoprotein enzyme, and its biogenesis is a fundamental process in all living cells. Recent X-ray crystal structures of the bacterial ribosome and new technologies have allowed a greater interrogation of in vitro ribosome assembly; however, substantially less is known about ribosome biogenesis in vivo. Ongoing investigations are focused on elucidating the cellular processes that facilitate biogenesis of the ribosomal subunits, and many extraribosomal factors, including modification enzymes, remodeling enzymes and GTPases, are being uncovered. Moreover, specific roles for ribosome biogenesis factors in subunit maturation are now being elaborated. Ultimately, such studies will reveal a more complete understanding of processes at work in in vivo ribosome biogenesis.

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Year:  2009        PMID: 19376708      PMCID: PMC3711711          DOI: 10.1016/j.tibs.2009.01.011

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  80 in total

1.  The essential GTPase RbgA (YlqF) is required for 50S ribosome assembly in Bacillus subtilis.

Authors:  William C Uicker; Laura Schaefer; Robert A Britton
Journal:  Mol Microbiol       Date:  2006-01       Impact factor: 3.501

2.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

Review 3.  Ribosomal proteins in the spotlight.

Authors:  Daniel N Wilson; Knud H Nierhaus
Journal:  Crit Rev Biochem Mol Biol       Date:  2005 Sep-Oct       Impact factor: 8.250

4.  Transcriptional polarity in rRNA operons of Escherichia coli nusA and nusB mutant strains.

Authors:  Selwyn Quan; Ning Zhang; Sarah French; Catherine L Squires
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

5.  Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly.

Authors:  Manjuli R Sharma; Chandana Barat; Daniel N Wilson; Timothy M Booth; Masahito Kawazoe; Chie Hori-Takemoto; Mikako Shirouzu; Shigeyuki Yokoyama; Paola Fucini; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2005-04-29       Impact factor: 17.970

6.  An assembly landscape for the 30S ribosomal subunit.

Authors:  Megan W T Talkington; Gary Siuzdak; James R Williamson
Journal:  Nature       Date:  2005-12-01       Impact factor: 49.962

7.  Recognition of a complex substrate by the KsgA/Dim1 family of enzymes has been conserved throughout evolution.

Authors:  Heather C O'Farrell; Nagesh Pulicherla; Pooja M Desai; Jason P Rife
Journal:  RNA       Date:  2006-03-15       Impact factor: 4.942

8.  The YrdC protein--a putative ribosome maturation factor.

Authors:  Magdalena Kaczanowska; Monica Rydén-Aulin
Journal:  Biochim Biophys Acta       Date:  2004-12-31

9.  Large-scale identification of protein-protein interaction of Escherichia coli K-12.

Authors:  Mohammad Arifuzzaman; Maki Maeda; Aya Itoh; Kensaku Nishikata; Chiharu Takita; Rintaro Saito; Takeshi Ara; Kenji Nakahigashi; Hsuan-Cheng Huang; Aki Hirai; Kohei Tsuzuki; Seira Nakamura; Mohammad Altaf-Ul-Amin; Taku Oshima; Tomoya Baba; Natsuko Yamamoto; Tomoyo Kawamura; Tomoko Ioka-Nakamichi; Masanari Kitagawa; Masaru Tomita; Shigehiko Kanaya; Chieko Wada; Hirotada Mori
Journal:  Genome Res       Date:  2006-04-10       Impact factor: 9.043

Review 10.  RNA folding and ribosome assembly.

Authors:  Sarah A Woodson
Journal:  Curr Opin Chem Biol       Date:  2008-10-18       Impact factor: 8.822

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  46 in total

1.  Nonessential plastid-encoded ribosomal proteins in tobacco: a developmental role for plastid translation and implications for reductive genome evolution.

Authors:  Tobias T Fleischmann; Lars B Scharff; Sibah Alkatib; Sebastian Hasdorf; Mark A Schöttler; Ralph Bock
Journal:  Plant Cell       Date:  2011-09-20       Impact factor: 11.277

2.  Structural insights into methyltransferase KsgA function in 30S ribosomal subunit biogenesis.

Authors:  Daniel Boehringer; Heather C O'Farrell; Jason P Rife; Nenad Ban
Journal:  J Biol Chem       Date:  2012-02-03       Impact factor: 5.157

3.  Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor.

Authors:  Ahmad Jomaa; Geordie Stewart; Jason A Mears; Inga Kireeva; Eric D Brown; Joaquin Ortega
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

4.  Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Authors:  Paul Dominic B Olinares; Lalit Ponnala; Klaas J van Wijk
Journal:  Mol Cell Proteomics       Date:  2010-04-26       Impact factor: 5.911

5.  RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis.

Authors:  Simon Goto; Shingo Kato; Takatsugu Kimura; Akira Muto; Hyouta Himeno
Journal:  EMBO J       Date:  2010-11-23       Impact factor: 11.598

Review 6.  Powering through ribosome assembly.

Authors:  Bethany S Strunk; Katrin Karbstein
Journal:  RNA       Date:  2009-10-22       Impact factor: 4.942

7.  Understanding ribosome assembly: the structure of in vivo assembled immature 30S subunits revealed by cryo-electron microscopy.

Authors:  Ahmad Jomaa; Geordie Stewart; Jaime Martín-Benito; Ryszard Zielke; Tracey L Campbell; Janine R Maddock; Eric D Brown; Joaquin Ortega
Journal:  RNA       Date:  2011-02-08       Impact factor: 4.942

Review 8.  The small subunit processome in ribosome biogenesis—progress and prospects.

Authors:  Kathleen R Phipps; J Michael Charette; Susan J Baserga
Journal:  Wiley Interdiscip Rev RNA       Date:  2011 Jan-Feb       Impact factor: 9.957

9.  Overexpression of RbfA in the absence of the KsgA checkpoint results in impaired translation initiation.

Authors:  Keith Connolly; Gloria Culver
Journal:  Mol Microbiol       Date:  2013-02-06       Impact factor: 3.501

10.  RBF1, a plant homolog of the bacterial ribosome-binding factor RbfA, acts in processing of the chloroplast 16S ribosomal RNA.

Authors:  Rikard Fristedt; Lars B Scharff; Cornelia A Clarke; Qin Wang; Chentao Lin; Sabeeha S Merchant; Ralph Bock
Journal:  Plant Physiol       Date:  2013-11-08       Impact factor: 8.340

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